Lintian Fixes - fasttree

Ready changes

Merge these changes:

git pull https://janitor.debian.net/git/fasttree lintian-fixes/main

Summary

Diff

=== modified file 'debian/changelog'
--- a/debian/changelog	2019-07-31 13:45:07 +0000
+++ b/debian/changelog	2019-11-23 22:45:32 +0000
@@ -1,3 +1,12 @@
+fasttree (2.1.11-2) UNRELEASED; urgency=medium
+
+  * Trim trailing whitespace.
+  * Update standards version to 4.4.1, no changes needed.
+  * Set fields Upstream-Contact in debian/copyright.
+  * Remove obsolete fields Contact, Name from debian/upstream/metadata.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Sat, 23 Nov 2019 22:44:22 +0000
+
 fasttree (2.1.11-1) unstable; urgency=medium
 
   [ Jelmer Vernooń≥ ]

=== modified file 'debian/control'
--- a/debian/control	2019-07-31 13:43:36 +0000
+++ b/debian/control	2019-11-23 22:44:53 +0000
@@ -7,7 +7,7 @@
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.4.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/fasttree
 Vcs-Git: https://salsa.debian.org/med-team/fasttree.git
 Homepage: http://www.microbesonline.org/fasttree/

=== modified file 'debian/copyright'
--- a/debian/copyright	2017-06-29 11:44:16 +0000
+++ b/debian/copyright	2019-11-23 22:45:12 +0000
@@ -1,6 +1,7 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: FastTree
 Source: http://www.microbesonline.org/fasttree/#Install
+Upstream-Contact: fasttree@microbesonline.org
 
 Files: *
 Copyright: (C) 2008-2016 The Regents of the University of California

=== modified file 'debian/rules'
--- a/debian/rules	2019-07-31 13:43:36 +0000
+++ b/debian/rules	2019-11-23 22:44:30 +0000
@@ -16,4 +16,3 @@
 
 get-orig-source:
 	./debian/get-orig-source
-

=== modified file 'debian/upstream/metadata'
--- a/debian/upstream/metadata	2019-09-20 12:50:45 +0000
+++ b/debian/upstream/metadata	2019-11-23 22:45:32 +0000
@@ -1,27 +1,24 @@
-Contact: fasttree@microbesonline.org
-Name: FastTree
 Reference:
- author: Price, Morgan N. AND Dehal, Paramvir S. AND Arkin, Adam P.
- journal: PLoS ONE
- publisher: Public Library of Science
- title: >
-  FastTree 2 -- Approximately Maximum-Likelihood Trees for Large Alignments.
- year: 2010
- month: 03
- volume: 5
- pages: e9490
- number: 3
- doi: 10.1371/journal.pone.0009490
- pmid: 20224823
- url: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0009490
- eprint: "http://www.plosone.org/article/fetchObjectAttachment.action?\
-  uri=info%3Adoi%2F10.1371%2Fjournal.pone.0009490&representation=PDF"
+  author: Price, Morgan N. AND Dehal, Paramvir S. AND Arkin, Adam P.
+  journal: PLoS ONE
+  publisher: Public Library of Science
+  title: >
+    FastTree 2 -- Approximately Maximum-Likelihood Trees for Large Alignments.
+  year: 2010
+  month: 03
+  volume: 5
+  pages: e9490
+  number: 3
+  doi: 10.1371/journal.pone.0009490
+  pmid: 20224823
+  url: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0009490
+  eprint: "http://www.plosone.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0009490&representation=PDF"
 Registry:
- - Name: OMICtools
-   Entry: OMICS_14703
- - Name: SciCrunch
-   Entry: SCR_015501
- - Name: bio.tools
-   Entry: fasttree
- - Name: conda:bioconda
-   Entry: fasttree
+- Name: OMICtools
+  Entry: OMICS_14703
+- Name: SciCrunch
+  Entry: SCR_015501
+- Name: bio.tools
+  Entry: fasttree
+- Name: conda:bioconda
+  Entry: fasttree

Run locally

Try this locally (using the lintian-brush package):

debcheckout fasttree
cd fasttree
lintian-brush

More details

Full run details