Lintian Fixes - fasttree
Ready changes
Merge these changes:
git pull https://janitor.debian.net/git/fasttree lintian-fixes/main
Summary
- Trim trailing whitespace. (file-contains-trailing-whitespace)
- Update standards version to 4.4.1, no changes needed. (out-of-date-standards-version)
- Set fields Upstream-Contact in debian/copyright.
- Remove obsolete fields Contact, Name from debian/upstream/metadata.
Diff
=== modified file 'debian/changelog'
--- a/debian/changelog 2019-07-31 13:45:07 +0000
+++ b/debian/changelog 2019-11-23 22:45:32 +0000
@@ -1,3 +1,12 @@
+fasttree (2.1.11-2) UNRELEASED; urgency=medium
+
+ * Trim trailing whitespace.
+ * Update standards version to 4.4.1, no changes needed.
+ * Set fields Upstream-Contact in debian/copyright.
+ * Remove obsolete fields Contact, Name from debian/upstream/metadata.
+
+ -- Debian Janitor <janitor@jelmer.uk> Sat, 23 Nov 2019 22:44:22 +0000
+
fasttree (2.1.11-1) unstable; urgency=medium
[ Jelmer Vernooij ]
=== modified file 'debian/control'
--- a/debian/control 2019-07-31 13:43:36 +0000
+++ b/debian/control 2019-11-23 22:44:53 +0000
@@ -7,7 +7,7 @@
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.4.0
+Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/fasttree
Vcs-Git: https://salsa.debian.org/med-team/fasttree.git
Homepage: http://www.microbesonline.org/fasttree/
=== modified file 'debian/copyright'
--- a/debian/copyright 2017-06-29 11:44:16 +0000
+++ b/debian/copyright 2019-11-23 22:45:12 +0000
@@ -1,6 +1,7 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: FastTree
Source: http://www.microbesonline.org/fasttree/#Install
+Upstream-Contact: fasttree@microbesonline.org
Files: *
Copyright: (C) 2008-2016 The Regents of the University of California
=== modified file 'debian/rules'
--- a/debian/rules 2019-07-31 13:43:36 +0000
+++ b/debian/rules 2019-11-23 22:44:30 +0000
@@ -16,4 +16,3 @@
get-orig-source:
./debian/get-orig-source
-
=== modified file 'debian/upstream/metadata'
--- a/debian/upstream/metadata 2019-09-20 12:50:45 +0000
+++ b/debian/upstream/metadata 2019-11-23 22:45:32 +0000
@@ -1,27 +1,24 @@
-Contact: fasttree@microbesonline.org
-Name: FastTree
Reference:
- author: Price, Morgan N. AND Dehal, Paramvir S. AND Arkin, Adam P.
- journal: PLoS ONE
- publisher: Public Library of Science
- title: >
- FastTree 2 -- Approximately Maximum-Likelihood Trees for Large Alignments.
- year: 2010
- month: 03
- volume: 5
- pages: e9490
- number: 3
- doi: 10.1371/journal.pone.0009490
- pmid: 20224823
- url: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0009490
- eprint: "http://www.plosone.org/article/fetchObjectAttachment.action?\
- uri=info%3Adoi%2F10.1371%2Fjournal.pone.0009490&representation=PDF"
+ author: Price, Morgan N. AND Dehal, Paramvir S. AND Arkin, Adam P.
+ journal: PLoS ONE
+ publisher: Public Library of Science
+ title: >
+ FastTree 2 -- Approximately Maximum-Likelihood Trees for Large Alignments.
+ year: 2010
+ month: 03
+ volume: 5
+ pages: e9490
+ number: 3
+ doi: 10.1371/journal.pone.0009490
+ pmid: 20224823
+ url: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0009490
+ eprint: "http://www.plosone.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0009490&representation=PDF"
Registry:
- - Name: OMICtools
- Entry: OMICS_14703
- - Name: SciCrunch
- Entry: SCR_015501
- - Name: bio.tools
- Entry: fasttree
- - Name: conda:bioconda
- Entry: fasttree
+- Name: OMICtools
+ Entry: OMICS_14703
+- Name: SciCrunch
+ Entry: SCR_015501
+- Name: bio.tools
+ Entry: fasttree
+- Name: conda:bioconda
+ Entry: fasttree
Run locally
Try this locally (using the lintian-brush package):
debcheckout fasttree
cd fasttree
lintian-brush