Lintian Fixes - infernal

Ready changes

Summary

  • Set field Upstream-Name in debian/copyright.
  • Fix typo in debian/rules rules: override_dh_compress ⇒ override_dh_compress ( typo-in-debhelper-override-target )
  • Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
  • Update standards version to 4.6.2, no changes needed. ( out-of-date-standards-version )

Lintian Result

Diff

diff --git a/debian/changelog b/debian/changelog
index a0fb5da..f8e41f8 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,13 @@
+infernal (1.1.4-2) UNRELEASED; urgency=medium
+
+  * Set field Upstream-Name in debian/copyright.
+  * Fix typo in debian/rules rules: override_dh_compress  ⇒ override_dh_compress
+  * Remove obsolete field Name from debian/upstream/metadata (already present in
+    machine-readable debian/copyright).
+  * Update standards version to 4.6.2, no changes needed.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Wed, 11 Jan 2023 15:52:05 -0000
+
 infernal (1.1.4-1) unstable; urgency=medium
 
   * Enable Architecture: all builds on arm4
diff --git a/debian/control b/debian/control
index 902c20b..61207a9 100644
--- a/debian/control
+++ b/debian/control
@@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 13),
 #                     texlive-fonts-recommended,
 #                     rman,
 #                     hmmer-examples
-Standards-Version: 4.5.1
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/infernal
 Vcs-Git: https://salsa.debian.org/med-team/infernal.git
 Homepage: http://eddylab.org/infernal/
diff --git a/debian/copyright b/debian/copyright
index 6d356fd..01dbc86 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -4,6 +4,7 @@ Upstream-Contact: Infernal developer team at HHMI Janelia Farm:
                          Eric Nawrocki <nawrockie janelia.hhmi.org>
                          Sean Eddy <eddys janelia.hhmi.org>.
 Source: ftp://infernal.janelia.org/pub/software/infernal/infernal-1.1.1.tar.gz
+Upstream-Name: Infernal
 
 Files: *
 Copyright: © 2001-2014 HHMI Janelia Farm
diff --git a/debian/rules b/debian/rules
index 0868c9d..91e77d1 100755
--- a/debian/rules
+++ b/debian/rules
@@ -20,7 +20,7 @@ override_dh_auto_clean:
 	dh_clean *.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1
 	rm -f testsuite/i49.tbl
 
-override_dh_compress :
+override_dh_compress:
 	dh_compress -X.pdf
 
 override_dh_auto_configure-arch:
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 07a203f..ab62b97 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -20,4 +20,3 @@ Registry:
 - Name: bio.tools
   Entry: NA   # infernal_cmscan does not fit
 Bug-Submit: eric.nawrocki@nih.gov
-Name: Infernal

Debdiff

[The following lists of changes regard files as different if they have different names, permissions or owners.]

Files in second set of .debs but not in first

-rw-r--r--  root/root   /usr/lib/debug/.build-id/00/abb2d83ddca984dc26b1375db73d0b974ffa9a.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/05/c90d18eab190acfc2aa5373f3cfcb97ce42b2c.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/0a/841800975d146876ffdaf826dffee081f6385d.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/36/a30d1226abe4ae7205e9738858c850414ca6b0.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/38/5b7728166455ac0da27b86e125e6f05cecb53b.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/7e/f785b557db9a292a67896120a6d5dd3af9941f.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/80/cd38927a9d0042682c8d37f6ef351410911cb8.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/8c/f8184592bb2764afb20745e4c3c92c4352b3a1.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/91/8cf297daf5d2b55c7cb20294147e6df256473a.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/99/4d45335b176b2e09a9581ad8a849bc67869d44.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/a8/8e0959a553aa362a57c6610ce79b6849b036e7.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/b0/e708c33b889de9fd40f9d71b82065203d8ab31.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/b8/011ac363bf0278d0de5ae2cfe995e2094e4d36.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/bd/8e2ca91fa8fb1835eedfe4845f9f3d15ac9353.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/c0/92146d19ff8466f069723559b98efba2139370.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/d1/0d267350c34742de2059fb1e14839ed2c21256.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/d3/b5e907e04b5b629607c41d8152949c41ba7b94.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/d9/1085dc0c52b5f729528cacf78cfe37100cfdf1.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/f6/f3d64df3f9909852616dd9afc787096637c393.debug

Files in first set of .debs but not in second

-rw-r--r--  root/root   /usr/lib/debug/.build-id/03/817e0386b74784a436d2452cfe05ca68148ef0.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/17/470fc6a7beb48bf8303bf9fdc2ac35596d341c.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/3d/65f29ece14f9360d6498fd8866b8a555884954.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/47/c13d31283e6d8ec9832158a14a639f6589f0dd.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/48/96d75da6ee1309e11b68b212ff751dd67742c0.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/53/cf626426fb2c55046395122f4184fbd56f56af.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/7b/fa4b18aa982472128dfc549f065e76c6d3df0c.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/7d/35efa6e4f4660b84b536901ab68ba706ea6eca.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/93/e1a60f4d3ea71acdb7efeca6dc5dbfbead547a.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/a4/3b34ef36767f3ff495b72be34a00c7b50a1f8f.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/a4/4730c4637cb0dd9ed86a6981cef9164b3dfb2a.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ad/2a9fd1dd67615a633cfcd02b602705f261b844.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/d1/c8c6860b29d3de9cfcb09b752fb9e93e43143d.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/df/e152847589c5e8dca22d45de2bfb8c7113ac01.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/eb/08acd28e45bb1ac2af54613b5a121eb4331754.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ec/063bccbaa3657707d33b688d5e9186f5959f25.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/f2/b35d7e2657adc2c6bc581933311d9bdf1ea852.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/f3/507e43151a6df8a3504620793eca399d4e180c.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/f9/4d03a99b5854ef0e208f87eeea28e50edc7336.debug

No differences were encountered between the control files of package infernal

Control files of package infernal-dbgsym: lines which differ (wdiff format)

  • Build-Ids: 03817e0386b74784a436d2452cfe05ca68148ef0 17470fc6a7beb48bf8303bf9fdc2ac35596d341c 3d65f29ece14f9360d6498fd8866b8a555884954 47c13d31283e6d8ec9832158a14a639f6589f0dd 4896d75da6ee1309e11b68b212ff751dd67742c0 53cf626426fb2c55046395122f4184fbd56f56af 7bfa4b18aa982472128dfc549f065e76c6d3df0c 7d35efa6e4f4660b84b536901ab68ba706ea6eca 93e1a60f4d3ea71acdb7efeca6dc5dbfbead547a a43b34ef36767f3ff495b72be34a00c7b50a1f8f a44730c4637cb0dd9ed86a6981cef9164b3dfb2a ad2a9fd1dd67615a633cfcd02b602705f261b844 d1c8c6860b29d3de9cfcb09b752fb9e93e43143d dfe152847589c5e8dca22d45de2bfb8c7113ac01 eb08acd28e45bb1ac2af54613b5a121eb4331754 ec063bccbaa3657707d33b688d5e9186f5959f25 f2b35d7e2657adc2c6bc581933311d9bdf1ea852 f3507e43151a6df8a3504620793eca399d4e180c f94d03a99b5854ef0e208f87eeea28e50edc7336 00abb2d83ddca984dc26b1375db73d0b974ffa9a 05c90d18eab190acfc2aa5373f3cfcb97ce42b2c 0a841800975d146876ffdaf826dffee081f6385d 36a30d1226abe4ae7205e9738858c850414ca6b0 385b7728166455ac0da27b86e125e6f05cecb53b 7ef785b557db9a292a67896120a6d5dd3af9941f 80cd38927a9d0042682c8d37f6ef351410911cb8 8cf8184592bb2764afb20745e4c3c92c4352b3a1 918cf297daf5d2b55c7cb20294147e6df256473a 994d45335b176b2e09a9581ad8a849bc67869d44 a88e0959a553aa362a57c6610ce79b6849b036e7 b0e708c33b889de9fd40f9d71b82065203d8ab31 b8011ac363bf0278d0de5ae2cfe995e2094e4d36 bd8e2ca91fa8fb1835eedfe4845f9f3d15ac9353 c092146d19ff8466f069723559b98efba2139370 d10d267350c34742de2059fb1e14839ed2c21256 d3b5e907e04b5b629607c41d8152949c41ba7b94 d91085dc0c52b5f729528cacf78cfe37100cfdf1 f6f3d64df3f9909852616dd9afc787096637c393

No differences were encountered between the control files of package infernal-doc

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