Lintian Fixes - ncbi-blast+
Ready changes
Summary
- Update lintian override info format in d/source/lintian-overrides on line 2-4. ( mismatched-override )
- Trim trailing whitespace. ( trailing-whitespace )
- Refer to common license file for Apache-2.0. ( copyright-does-not-refer-to-common-license-file , copyright-not-using-common-license-for-apache2 )
- Update standards version to 4.6.2, no changes needed. ( out-of-date-standards-version )
- Avoid explicitly specifying -Wl,--as-needed linker flag. ( debian-rules-uses-as-needed-linker-flag )
Diff
diff --git a/debian/changelog b/debian/changelog
index a9e6c84f..53513195 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,7 +1,18 @@
+ncbi-blast+ (2.12.0+ds-4) UNRELEASED; urgency=medium
+
+ * Update lintian override info format in d/source/lintian-overrides on line
+ 2-4.
+ * Trim trailing whitespace.
+ * Refer to common license file for Apache-2.0.
+ * Update standards version to 4.6.2, no changes needed.
+ * Avoid explicitly specifying -Wl,--as-needed linker flag.
+
+ -- Debian Janitor <janitor@jelmer.uk> Fri, 17 Mar 2023 11:26:57 -0000
+
ncbi-blast+ (2.12.0+ds-3) unstable; urgency=medium
* d/patches/optin_usage_report change usage reports sending over
- internet strategy to optin (disabled by default unless specified)
+ internet strategy to optin (disabled by default unless specified)
(Closes # 1005279).
-- Olivier Sallou <osallou@debian.org> Thu, 10 Feb 2022 12:17:56 +0000
@@ -11,7 +22,7 @@ ncbi-blast+ (2.12.0+ds-2) unstable; urgency=medium
* Clean up spurious release-status comment from 2.12.0+ds-1.
* debian/patches/system_mbedtls_only: Patch out use of local mbed TLS
headers, which formally rename all symbols.
-
+
-- Aaron M. Ucko <ucko@debian.org> Wed, 01 Dec 2021 23:36:32 -0500
ncbi-blast+ (2.12.0+ds-1) unstable; urgency=medium
diff --git a/debian/control b/debian/control
index 7c1543f2..ea547f9b 100644
--- a/debian/control
+++ b/debian/control
@@ -17,7 +17,7 @@ Build-Depends-Arch: 2to3,
time,
zlib1g-dev,
procps
-Standards-Version: 4.6.0
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/ncbi-blastplus
Vcs-Git: https://salsa.debian.org/med-team/ncbi-blastplus.git
Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
diff --git a/debian/copyright b/debian/copyright
index 7c448bf0..2453aa4c 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -40,6 +40,9 @@ License: Apache-2.0
WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
+ .
+ On Debian systems, the full text of the Apache License, Version 2.0 can be
+ found in the file `/usr/share/common-licenses/Apache-2.0'.
Files: c++/src/html/ncbi_menu.js
c++/src/html/ncbi_menu_dnd.js
diff --git a/debian/rules b/debian/rules
index ef8b0e7f..65213ec0 100755
--- a/debian/rules
+++ b/debian/rules
@@ -26,8 +26,6 @@ DEB_CONFIGURE_EXTRA_FLAGS += --with-symbols
#export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
export DEB_CFLAGS_MAINT_APPEND=-Wall -pedantic
-# Kept for the sake of backports, which can't rely on GCC 9+.
-export DEB_LDFLAGS_MAINT_APPEND=-Wl,--as-needed
include /usr/share/dpkg/architecture.mk
include /usr/share/dpkg/buildflags.mk
diff --git a/debian/source/lintian-overrides b/debian/source/lintian-overrides
index b914721d..7d65be7f 100644
--- a/debian/source/lintian-overrides
+++ b/debian/source/lintian-overrides
@@ -1,7 +1,7 @@
# Line length detection, nothing missing in source js files
-ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu.js
-ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu_dnd.js
-ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu_dyn.js
+ncbi-blast+ source: source-is-missing [c++/src/html/ncbi_menu.js]
+ncbi-blast+ source: source-is-missing [c++/src/html/ncbi_menu_dnd.js]
+ncbi-blast+ source: source-is-missing [c++/src/html/ncbi_menu_dyn.js]
# JSON not evil license, related code is not present
ncbi-blast+ source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson10/license.txt
ncbi-blast+ source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson11/license.txt
Debdiff
[The following lists of changes regard files as different if they have different names, permissions or owners.]
Files in second set of .debs but not in first
-rw-r--r-- root/root /usr/lib/debug/.build-id/26/ea4be991c8e28e31d622d178949b1ff8910082.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/27/a27db588427a1aee262fbc313f739b38b61c52.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/2c/7aee1ce91dbc90861f777f22041d5e0c69ec03.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/2d/b392ba49dbcfb0406af2dc2bf8ac262ad7f7b6.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/2f/e1aeaaa900e90cb83545ccf2c461d7c24ff9a4.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/32/700acec8b4b5407047e788db54317d82925de1.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/33/c0a67c27502e6c449c70f26390b4ab911a6c54.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/43/66d252097280c883611830b30edcd45a19642f.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/49/17378feb692b76c50022dc1aad92f6aa7bd4a8.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/56/1b876744abbcf6e5af84c89ee8d8e0d11d666b.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/68/485bbb18e98949e7336c5cd7a241bcb9f531d0.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/70/48090f3bd83bddfefcfe159249c5d4ebc72e5b.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/7c/b6a2e86f5a261ace35a9e78fcf50bd80d22bc4.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/8c/1932197c4218280e2bd33ed119e495b0fdab00.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/a2/bd4e10889b257c00eefdc3eb59f5421ff2a697.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/ab/823bff75897f6b97023d662049499a4ffa514c.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/ae/4d292384d0ab0e1485d24f8a2ac58b1107aba2.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/b7/666c79663832e5ee250b3813ee56e9dfe5915d.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/bc/69434243bbbbf36c1baa73e5a75e7f9f10af86.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/c2/fbaaf6207094a6559a5f30909a771590d2ed3b.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/c6/f1fb1560dde4b9b5747e1763068a6670227ac5.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/c8/26e2980246cfd27917b5330e996e3ac752c371.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/cb/d9abafbf010e7379613e0fcdb0ef323fb949df.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/cc/c2affa56a421b5d3f4200d9dde2194b2405d8f.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/cd/c5cdd0dedab817b556af589a56f61c558f93ca.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/ce/0a695eed8004b54ff3def905a4ccfdd32ce887.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/d7/3d8301f9c1d1e2d459c8debe7cc4ac486545b1.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/de/43d79d972d929377b9403897f81e33103c48c4.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/e2/c6ceb2316280b74c043d21cbc8985bf745c6de.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/f0/b0df1b9ccfe44c91e3aad616567b8942ddeedc.debug
Files in first set of .debs but not in second
-rw-r--r-- root/root /usr/lib/debug/.build-id/05/1ec7aaf9ed2b68f28cd6f8e233f179a37e6b9d.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/10/a5044275d9f220c4073cc9794bd50e3eb1b009.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/19/7728011af0a396ec6d48d333940e70253da700.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/1a/acf95c9d7c5568f4f3dbb7c845de5ed5c2cd5c.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/1a/d091f8cea7680122a01c6862d618910d3c88b8.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/1b/8403e3ce7c34b0bfab70151e90de7e8234c0e9.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/25/bde89e4ad7807c0ea1acebbba4dc1d22242d1f.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/28/8cfc4e133c669adcea88d5afce6413d1c1ee21.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/2b/fab8848c84344463bebd939a3effc504c6ef5a.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/34/a4f2a2a7e93adaf89d051470f8a54646029979.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/55/854d3db6f040a310c4e483aa9a708515fbae0e.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/57/ab1a927803e55fc66cb07b9ecfb48174f388ba.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/5a/183340a5fa9809d4f7986aec2907be6560a154.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/5d/252151d121ae7bb27ec110765f10c1d0d405f4.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/66/5644306e800db77a6a5711434a4c13b287ac30.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/6b/6aeee5dfe0d9cff3755371c4bc831264ce1fd3.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/6c/0bc3188d9aeeec27bfa109234f5a9cc616a548.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/71/eef93671731b4cabb3e61647bd35a67b69dd70.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/7c/503cfad42b45edb80661f38f2980454eb2e7e7.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/80/a1ca8b477cdde26cf205ba9af6fd4c2c04aeb1.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/82/c85df9eca4d005676a9874574bd91d755d4a6c.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/83/07460fe454e232cc9b04fd132614df2d57cb2c.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/93/619f4aed9350d682a91252d11593a24c7b7963.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/a1/62746c1f7795073284043ed5b16544e832274c.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/b6/9b5918cd14403d4684759d88cc7ffcdd469ad4.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/ba/fe9cbffe5c71cbc2c7453d803478fa38649172.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/bd/2c81990e1e3a82230f177d2db6b866de7d790b.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/e5/a3fb1cc2d3175aec931ca6a0b7f94e8a146c56.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/e8/9acd8a098208cc94064ead98cf7e045f3beb39.debug -rw-r--r-- root/root /usr/lib/debug/.build-id/f5/14c4ed75c2aa3153d04743c9fa0e6129278637.debug
No differences were encountered between the control files of package ncbi-blast+
Control files of package ncbi-blast+-dbgsym: lines which differ (wdiff format)
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No differences were encountered between the control files of package ncbi-blast+-legacy