Lintian Fixes - psortb

• QA Page
• Maintainer email: debian-med-packaging@lists.alioth.debian.org
• Automatic publish policy: main: push-derived , pristine-tar: push-derived , upstream: push-derived
• Last processed: 2023-07-12T23:27 (took 6m28s)
• Branch URL: https://salsa.debian.org/med-team/psortb.git -b master (taken from version 3.0.6+dfsg-3)
• Tags that might be fixable: upstream-metadata-missing-repository debian-watch-does-not-check-openpgp-signature upstream-metadata-missing-bug-tracking
• Queue position: 153706 (a 90w6d wait)

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Summary

• Update standards version to 4.6.2, no changes needed. ( out-of-date-standards-version )

Diff

diff --git a/debian/control b/debian/control
index 85c0879..bd08bdb 100644
--- a/debian/control
+++ b/debian/control
@@ -14,7 +14,7 @@ Build-Depends: debhelper-compat (= 13),
                libmodhmm-dev,
                pkg-config,
                pftools,
-Standards-Version: 4.6.0
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/psortb
 Vcs-Git: https://salsa.debian.org/med-team/psortb.git
 Homepage: https://www.psort.org/

Debdiff

[The following lists of changes regard files as different if they have different names, permissions or owners.]

Files in second set of .debs but not in first

-rw-r--r--  root/root   /usr/lib/debug/.build-id/34/be041de4ca2ae0da5ab5a5c2c28f40dde0bfc7.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/f3/519aa3eea78c05a44117fcaded83518eb52309.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ff/8bad38079dfc11cca7a05aca753acf6c14719a.debug
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Algorithm/HMM.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Algorithm/HMM/Hit.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Algorithm/HMM/Hit/Domain.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Algorithm/HMM/Hit/Global.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Algorithm/HMM/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Motif.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Motif/Match.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Motif/Pattern.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Constants.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Install.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/ModHMM.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/AnalysisI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/Bayesian.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/HMMTOP.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/InputI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/ModHMM.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/Motif.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/Null.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/OMPMotif.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/OutputI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/Profile.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/Rules.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/SCLBlast.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/SVMLoc.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/SVMLocApache.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Module/Signal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/ModuleI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Pathway.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Profile.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Profile/Match.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report/Formatter.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report/Formatter/html.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report/Formatter/long.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report/Formatter/normal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report/Formatter/terse.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/Report/Result.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/SVMLoc.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/SVMLoc/DataSet.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/PSort/XMLRPC/Client.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/HMMTOP.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/HMMTOP/Helix.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/HMMTOP/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/SCLBlast.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/SCLBlast/Hit.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/SCLBlast/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Run/SCLBlastLocal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/SVMLoc.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Signal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/Tools/Signal/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Algorithm/HMM/HMM.so
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Algorithm/HMM/autosplit.ix
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/Tools/PSort/ModHMM/ModHMM.so
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/Tools/PSort/ModHMM/autosplit.ix
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/Tools/PSort/SVMLoc/autosplit.ix

Files in first set of .debs but not in second

-rw-r--r--  root/root   /usr/lib/debug/.build-id/2a/eab7a8868908715d5a4178c639999d83d4554f.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/6c/8d7e0dad23035a05f41a458a71ccf1a7226d0e.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/fa/bdb40d022a4dc6e751de73d44cc86068d25268.debug
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Hit.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Hit/Domain.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Hit/Global.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Motif.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Motif/Match.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Motif/Pattern.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Constants.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Install.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/ModHMM.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/AnalysisI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Bayesian.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/HMMTOP.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/InputI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/ModHMM.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Motif.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Null.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/OMPMotif.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/OutputI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Profile.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Rules.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/SCLBlast.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/SVMLoc.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/SVMLocApache.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Signal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/ModuleI.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Pathway.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Profile.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Profile/Match.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/html.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/long.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/normal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/terse.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Result.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/SVMLoc.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/SVMLoc/DataSet.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/XMLRPC/Client.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/HMMTOP.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/HMMTOP/Helix.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/HMMTOP/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlast.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlast/Hit.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlast/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlastLocal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/SVMLoc.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Signal.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Signal/Report.pm
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Algorithm/HMM/HMM.so
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Algorithm/HMM/autosplit.ix
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/ModHMM/ModHMM.so
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/ModHMM/autosplit.ix
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so
-rw-r--r--  root/root   /usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/SVMLoc/autosplit.ix

Control files of package psortb: lines which differ (wdiff format)

• Depends: libc6 (>= 2.14), 2.34), libgcc-s1 (>= 3.0), libmodhmm0 (>= 1.0+dfsg), libsquid1 (>= 1.9g+cvs20050121), libstdc++6 (>= 5), libsvmloc0 (>= 1.0+dfsg), perl, perlapi-5.34.0, perl (>= 5.36.0-7), perlapi-5.36.0, libbio-perl-perl, libbio-perl-run-perl, libalgorithm-svm-perl, pftools, librpc-xml-perl

Control files of package psortb-dbgsym: lines which differ (wdiff format)

• Build-Ids: 2aeab7a8868908715d5a4178c639999d83d4554f 6c8d7e0dad23035a05f41a458a71ccf1a7226d0e fabdb40d022a4dc6e751de73d44cc86068d25268 34be041de4ca2ae0da5ab5a5c2c28f40dde0bfc7 f3519aa3eea78c05a44117fcaded83518eb52309 ff8bad38079dfc11cca7a05aca753acf6c14719a

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