Lintian Fixes - reapr

• QA Page
• Maintainer email: debian-med-packaging@lists.alioth.debian.org
• Automatic publish policy: main: push-derived , pristine-tar: push-derived , upstream: push-derived
• Last processed: 2023-05-04T23:13 (took 28m39s)
• Branch URL: https://salsa.debian.org/med-team/reapr.git -b master (taken from version 1.0.18+dfsg-6)
• Tags that might be fixable: older-debian-watch-file-standard debian-watch-uses-insecure-uri debian-watch-does-not-check-openpgp-signature upstream-metadata-missing-bug-tracking upstream-metadata-missing-repository silent-on-rules-requiring-root
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Summary

• Bump debhelper from old 12 to 13. ( package-uses-old-debhelper-compat-version )
• Update renamed lintian tag names in lintian overrides. ( renamed-tag )
• Update standards version to 4.6.2, no changes needed. ( out-of-date-standards-version )

Lintian Result

• reapr-dbgsym_1.0.18+dfsg-6~jan+lint1_amd64.deb
• reapr_1.0.18+dfsg-6~jan+lint1.dsc
• reapr_1.0.18+dfsg-6~jan+lint1_amd64.buildinfo
• reapr_1.0.18+dfsg-6~jan+lint1_amd64.deb
• reapr_1.0.18+dfsg-6~jan+lint1_amd64.changes

Diff

diff --git a/debian/changelog b/debian/changelog
index f13cc5d..8a4644e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,13 @@
+reapr (1.0.18+dfsg-6) UNRELEASED; urgency=medium
+
+  * Bump debhelper from old 12 to 13.
+    + Drop check for DEB_BUILD_OPTIONS containing "nocheck", since debhelper now
+      does this.
+  * Update renamed lintian tag names in lintian overrides.
+  * Update standards version to 4.6.2, no changes needed.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Thu, 04 May 2023 22:45:29 -0000
+
 reapr (1.0.18+dfsg-5) unstable; urgency=medium
 
   * Team upload.
diff --git a/debian/control b/debian/control
index fb63a84..e930661 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Sascha Steinbiss <satta@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                libbamtools-dev,
                libtabixpp-dev,
                libhts-dev (>= 1.3),
@@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 12),
                snpomatic,
                tabix,
                libfile-copy-link-perl
-Standards-Version: 4.4.0
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/reapr
 Vcs-Git: https://salsa.debian.org/med-team/reapr.git
 Homepage: https://www.sanger.ac.uk/science/tools/reapr
diff --git a/debian/rules b/debian/rules
index 3bc755c..700fa83 100755
--- a/debian/rules
+++ b/debian/rules
@@ -35,9 +35,7 @@ override_dh_auto_clean:
 	dh_auto_clean --
 
 override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	mkdir $(debfolder)/test
 	ln -s $(CURDIR)/src/reapr.pl $(debfolder)/test/reapr
 	PATH=$(PATH):$(CURDIR)/src:$(debfolder)/test $(debfolder)/tests/test-example
 	rm -rf $(debfolder)/test
-endif
diff --git a/debian/source/lintian-overrides b/debian/source/lintian-overrides
index d35d327..15824cc 100644
--- a/debian/source/lintian-overrides
+++ b/debian/source/lintian-overrides
@@ -1,2 +1,2 @@
 # Upstream does not provide signed tarballs
-reapr source: debian-watch-does-not-check-gpg-signature
+reapr source: debian-watch-does-not-check-openpgp-signature

Debdiff

[The following lists of changes regard files as different if they have different names, permissions or owners.]

Files in second set of .debs but not in first

-rw-r--r--  root/root   /usr/lib/debug/.build-id/28/da634a7635686d1d598395c16c19a6acc9934a.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/2c/10f635d9dc7fae0ba27b3070372947a329a383.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/3f/da71477d77e7966855d510f1b689dc90088db2.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/49/7bdf2c30e5655316431f0dc40f3e708f06c492.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/77/5a7509feb00ddccf65c9d46b721a8e5016cafb.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/79/84f70e4e891439ee5a240c3ed1acba23ec43c5.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/84/b6974a4a00d0bf9c80b514191218e576c70484.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/99/12884f6e57ebf8fe7053617a702e55b2d85ad2.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/a9/cbbe7ed7d852603703e6ef8588382c5ccac087.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ac/b9b1dad3b6bd0ae92ef023ed458d1ea0cc2282.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/bb/f925176b9416e08c2160ff3eade268e77a0f59.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/c7/2e1f4f6304e98d8f92e1d4943897314911f891.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/cb/18825db0004ff4ec688f9d43a6717e7e2fdf1f.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/cd/da09ec1b6d12fdc3634070eee28c06e63448ee.debug

Files in first set of .debs but not in second

-rw-r--r--  root/root   /usr/lib/debug/.build-id/0b/6c502f3a99cca8fe3d9f534ff03d5efafe2545.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/22/a2bc199ccd13107dc804551aece85f50661029.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/49/df67d63bf4e822a3490758f9f42ea426a3654b.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/6c/f880f626fa1fbd9d30ed0e5cb21de8b6a39c0b.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/78/069b12a71d41868399b1a3990ca21b0f5b9b9a.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/79/1739f9b8bb2259b13658447735642e54968007.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/96/b312b04d44e20c40d2a315848da89b2125d1fe.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/a5/b18cb14786b5e4249bf7ae4faa10275057bea1.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ac/d6ca01ed5dce08c46b262bc35a0140a91b8d0f.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ae/841d329eff07614ec64d63489da85eb035d2c6.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/df/1b10b60151cd05ab707b6169fa2ec9c2e92874.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ec/364b8b618ed0ca5dabc758df2937c491984ba9.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/ec/5f6355744186cee8992ee9f05221f3b11379d4.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/f7/0e8ad1907d8d19d03256b0170399cb7cf31188.debug

No differences were encountered between the control files of package reapr

Control files of package reapr-dbgsym: lines which differ (wdiff format)

• Build-Ids: 0b6c502f3a99cca8fe3d9f534ff03d5efafe2545 22a2bc199ccd13107dc804551aece85f50661029 49df67d63bf4e822a3490758f9f42ea426a3654b 6cf880f626fa1fbd9d30ed0e5cb21de8b6a39c0b 78069b12a71d41868399b1a3990ca21b0f5b9b9a 791739f9b8bb2259b13658447735642e54968007 96b312b04d44e20c40d2a315848da89b2125d1fe a5b18cb14786b5e4249bf7ae4faa10275057bea1 acd6ca01ed5dce08c46b262bc35a0140a91b8d0f ae841d329eff07614ec64d63489da85eb035d2c6 df1b10b60151cd05ab707b6169fa2ec9c2e92874 ec364b8b618ed0ca5dabc758df2937c491984ba9 ec5f6355744186cee8992ee9f05221f3b11379d4 f70e8ad1907d8d19d03256b0170399cb7cf31188 28da634a7635686d1d598395c16c19a6acc9934a 2c10f635d9dc7fae0ba27b3070372947a329a383 3fda71477d77e7966855d510f1b689dc90088db2 497bdf2c30e5655316431f0dc40f3e708f06c492 775a7509feb00ddccf65c9d46b721a8e5016cafb 7984f70e4e891439ee5a240c3ed1acba23ec43c5 84b6974a4a00d0bf9c80b514191218e576c70484 9912884f6e57ebf8fe7053617a702e55b2d85ad2 a9cbbe7ed7d852603703e6ef8588382c5ccac087 acb9b1dad3b6bd0ae92ef023ed458d1ea0cc2282 bbf925176b9416e08c2160ff3eade268e77a0f59 c72e1f4f6304e98d8f92e1d4943897314911f891 cb18825db0004ff4ec688f9d43a6717e7e2fdf1f cdda09ec1b6d12fdc3634070eee28c06e63448ee

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