Lintian Fixes - sibelia

• QA Page
• Maintainer email: debian-med-packaging@lists.alioth.debian.org
• Automatic publish policy: main: push-derived , pristine-tar: push-derived , upstream: push-derived
• Last processed: 2023-06-25T14:25 (took 38s)
• Branch URL: https://salsa.debian.org/med-team/sibelia.git -b master (taken from version 3.0.7+dfsg-3)
• Tags that might be fixable: debian-watch-does-not-check-openpgp-signature
• Queue position: 56980 (a 33w2d wait)

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Summary

• Update lintian override info to new format: ( mismatched-override )
• Bump debhelper from old 12 to 13. ( package-uses-old-debhelper-compat-version )
• Set upstream metadata fields: Archive.
• Update standards version to 4.6.2, no changes needed. ( out-of-date-standards-version )

Lintian Result

• sibelia-dbgsym_3.0.7+dfsg-4~jan+lint1_amd64.deb
• sibelia-examples_3.0.7+dfsg-4~jan+lint1_all.deb
• sibelia_3.0.7+dfsg-4~jan+lint1.dsc
• sibelia_3.0.7+dfsg-4~jan+lint1_amd64.buildinfo
• sibelia_3.0.7+dfsg-4~jan+lint1_amd64.deb
• sibelia_3.0.7+dfsg-4~jan+lint1_amd64.changes

Diff

diff --git a/debian/changelog b/debian/changelog
index bb7beda..02597e8 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,17 @@
+sibelia (3.0.7+dfsg-4) UNRELEASED; urgency=medium
+
+  * Update lintian override info to new format:
+    + debian/source/lintian-overrides: line 2
+    + debian/sibelia-annotate.lintian-overrides: line 2, 4
+    + debian/sibelia.lintian-overrides: line 2
+  * Bump debhelper from old 12 to 13.
+    + Drop check for DEB_BUILD_OPTIONS containing "nocheck", since debhelper now
+      does this.
+  * Set upstream metadata fields: Archive.
+  * Update standards version to 4.6.2, no changes needed.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Sat, 07 Jan 2023 00:05:23 -0000
+
 sibelia (3.0.7+dfsg-3) unstable; urgency=medium
 
   * Enable binary-all builds
diff --git a/debian/control b/debian/control
index 76de2fa..9848b7d 100644
--- a/debian/control
+++ b/debian/control
@@ -3,14 +3,14 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                cmake,
                libdivsufsort-dev,
                libboost-dev,
                libseqan2-dev,
                libtclap-dev,
                libhts-dev
-Standards-Version: 4.5.0
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/sibelia
 Vcs-Git: https://salsa.debian.org/med-team/sibelia.git
 Homepage: http://bioinf.spbau.ru/sibelia
diff --git a/debian/rules b/debian/rules
index 95a17df..28419b0 100755
--- a/debian/rules
+++ b/debian/rules
@@ -24,6 +24,4 @@ override_dh_installman-arch:
 	rm -rf debian/$(DEB_SOURCE)/usr/share/man/py
 
 override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	dh_auto_test --no-parallel
-endif
diff --git a/debian/sibelia-annotate.lintian-overrides b/debian/sibelia-annotate.lintian-overrides
index 2c45d06..0589993 100644
--- a/debian/sibelia-annotate.lintian-overrides
+++ b/debian/sibelia-annotate.lintian-overrides
@@ -1,4 +1,4 @@
 # see https://lists.debian.org/debian-med/2018/06/msg00043.html
-sibelia-annotate: script-with-language-extension usr/bin/*.*
+sibelia-annotate: script-with-language-extension [usr/bin/*.*]
 # this file should not be there in an official package - so just ignore the wrong place for now
-sibelia-annotate: jar-not-in-usr-share usr/lib/Sibelia/snpEff/snpEff.jar
+sibelia-annotate: jar-not-in-usr-share [usr/lib/Sibelia/snpEff/snpEff.jar]
diff --git a/debian/sibelia.lintian-overrides b/debian/sibelia.lintian-overrides
index 628c21f..d04d748 100644
--- a/debian/sibelia.lintian-overrides
+++ b/debian/sibelia.lintian-overrides
@@ -1,2 +1,2 @@
 # see https://lists.debian.org/debian-med/2018/06/msg00043.html
-sibelia: script-with-language-extension usr/bin/*.*
+sibelia: script-with-language-extension [usr/bin/*.*]
diff --git a/debian/source/lintian-overrides b/debian/source/lintian-overrides
index 7115a32..1c052cc 100644
--- a/debian/source/lintian-overrides
+++ b/debian/source/lintian-overrides
@@ -1,2 +1,2 @@
 # false positive
-sibelia source: source-is-missing examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html line length is *
+sibelia source: source-is-missing [examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html]
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 7de348f..ff2dc53 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,3 +1,4 @@
+Archive: SourceForge
 Bug-Submit: https://github.com/bioinf/Sibelia/issues/new
 Reference:
 - Author: >

Debdiff

[The following lists of changes regard files as different if they have different names, permissions or owners.]

Files in second set of .debs but not in first

-rw-r--r--  root/root   /usr/lib/debug/.build-id/17/59d1bef6ab22c3557d95509344ab56e5f7981e.debug

Files in first set of .debs but not in second

-rw-r--r--  root/root   /usr/lib/debug/.build-id/01/52a1bf7290458848f6e3489e80a0259ea05e41.debug

No differences were encountered between the control files of package sibelia

Control files of package sibelia-dbgsym: lines which differ (wdiff format)

• Build-Ids: 0152a1bf7290458848f6e3489e80a0259ea05e41 1759d1bef6ab22c3557d95509344ab56e5f7981e

No differences were encountered between the control files of package sibelia-examples

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