Source: barrnap
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
hmmer,
lua5.1,
bedtools
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/barrnap
Vcs-Git: https://salsa.debian.org/med-team/barrnap.git
Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml
Rules-Requires-Root: no
Package: barrnap
Architecture: all
Depends: ${perl:Depends},
${shlibs:Depends},
${misc:Depends},
hmmer,
bedtools
Description: rapid ribosomal RNA prediction
Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of
ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea
(5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
.
It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the
NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
Multithreading is supported and one can expect roughly linear speed-ups
with more CPUs.