ArgumentParser.cpp
ArgumentParser.h
CollapsedSampler.cpp
CollapsedSampler.h
common.cpp
common.h
convertSamples.cpp
estimateDE.cpp
estimateExpression.cpp
estimateHyperPar.cpp
estimateVBExpression.cpp
extractSamples.cpp
FileHeader.cpp
FileHeader.h
getFoldChange.cpp
getGeneExpression.cpp
getPPLR.cpp
getVariance.cpp
getWithinGeneExpression.cpp
GibbsParameters.cpp
GibbsParameters.h
GibbsSampler.cpp
GibbsSampler.h
lowess.cpp
lowess.h
misc.cpp
misc.h
MyTimer.cpp
MyTimer.h
parseAlignment.cpp
PosteriorSamples.cpp
PosteriorSamples.h
ReadDistribution.cpp
ReadDistribution.h
Sampler.cpp
Sampler.h
SimpleSparse.cpp
SimpleSparse.h
TagAlignments.cpp
TagAlignments.h
TranscriptExpression.cpp
TranscriptExpression.h
TranscriptInfo.cpp
TranscriptInfo.h
TranscriptSequence.cpp
TranscriptSequence.h
transposeFiles.cpp
transposeFiles.h
transposeLargeFile.cpp
VariationalBayes.cpp
VariationalBayes.h
extractTranscriptInfo.py
getCounts.py
parameters1.txt
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