DEST_DIR = ~/bin
CFLAGS = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
ALL = daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex
all: $(ALL)
daligner: daligner.c filter.c filter.h align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm
HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm
LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm
LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm
LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm
LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm
LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm
LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm
LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm
LAupgrade.Dec.31.2014: LAupgrade.Dec.31.2014.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm
LAindex: LAindex.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAindex LAindex.c align.c DB.c QV.c -lm
clean:
rm -f $(ALL)
rm -fr *.dSYM
rm -f LAupgrade.Dec.31.2014
rm -f daligner.tar.gz
install:
cp $(ALL) $(DEST_DIR)
package:
make clean
tar -zcf daligner.tar.gz README.md Makefile *.h *.c