Codebase list libmuscle / debian/latest debian / libmuscle1.symbols
debian/latest

Tree @debian/latest (Download .tar.gz)

libmuscle1.symbols @debian/latestraw · history · blame

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
libMUSCLE.so.1 libmuscle1 #MINVER#
 _ZN6muscle10ALPHAToStrENS_5ALPHAE@Base 3.7+4565
 _ZN6muscle10ALPHA_OptsE@Base 3.7+4565
 _ZN6muscle10ClustSetDF11ComputeDistERKNS_5ClustEjj@Base 3.7+4565
 _ZN6muscle10ClustSetDF11GetLeafNameEj@Base 3.7+4565
 _ZN6muscle10ClustSetDF12GetLeafCountEv@Base 3.7+4565
 _ZN6muscle10ClustSetDF9GetLeafIdEj@Base 3.7+4565
 _ZN6muscle10ClustSetDF9JoinNodesERKNS_5ClustEjjjPdS4_@Base 3.7+4565
 _ZN6muscle10CountKmersEPKhjPh@Base 3.7+4565
 _ZN6muscle10DiffTreesEERKNS_4TreeES2_Pj@Base 3.7+4565
 _ZN6muscle10DistCalcDF4InitERKNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle10DoMakeTreeEv@Base 3.7+4565
 _ZN6muscle10GetCmdLineEv@Base 3.7+4565
 _ZN6muscle10KimuraDistEd@Base 3.7+4565
 _ZN6muscle10ListParamsEv@Base 3.7+4565
 _ZN6muscle10LogEstringEPKs@Base 3.7+4565
 _ZN6muscle10MHackStartERNS_7SeqVectE@Base 3.7+4565
 _ZN6muscle10MergeDiagsERNS_8DiagListE@Base 3.7+4565
 _ZN6muscle10ObjScoreDPERKNS_3MSAES2_Pf@Base 3.7+4565
 _ZN6muscle10ObjScorePSERKNS_3MSAEPf@Base 3.7+4565
 _ZN6muscle10ObjScoreSPERKNS_3MSAEPf@Base 3.7+4565
 _ZN6muscle10ObjScoreXPERKNS_3MSAES2_@Base 3.7+4565
 _ZN6muscle10OutWeightsEPKcRKNS_3MSAE@Base 3.7+4565
 _ZN6muscle10RefineTreeERNS_3MSAERNS_4TreeE@Base 3.7+4565
 _ZN6muscle10RefineVertERNS_3MSAERKNS_4TreeEj@Base 3.7+4565
 _ZN6muscle10ScoreToStrEf@Base 3.7+4565
 _ZN6muscle10SetLogFileEv@Base 3.7+4565
 _ZN6muscle10SetPPScoreENS_7PPSCOREE@Base 3.7+4565
 _ZN6muscle10SetPPScoreEb@Base 3.7+4565
 _ZN6muscle10SortCountsEPKfPj@Base 3.7+4565
 _ZN6muscle10StrToALPHAEPKc@Base 3.7+4565
 _ZN6muscle10StrToScoreEPKc@Base 3.7+4565
 _ZN6muscle10SumLogFastEff@Base 3.7+4565
 _ZN6muscle10SumLogFastEfff@Base 3.7+4565
 _ZN6muscle10SumLogFastEffff@Base 3.7+4565
 _ZN6muscle10TrimBlanksEPc@Base 3.7+4565
 _ZN6muscle10g_Cluster1E@Base 3.7+4565
 _ZN6muscle10g_Cluster2E@Base 3.7+4565
 _ZN6muscle10g_ObjScoreE@Base 3.7+4565
 _ZN6muscle10g_TermGapsE@Base 3.7+4565
 _ZN6muscle10g_bAnchorsE@Base 3.7+4565
 _ZN6muscle10g_bBrennerE@Base 3.7+4565
 _ZN6muscle10g_bPPScoreE@Base 3.7+4565
 _ZN6muscle10g_bProfileE@Base 3.7+4565
 _ZN6muscle10g_bRefineWE@Base 3.7+4565
 _ZN6muscle10g_bVerboseE@Base 3.7+4565
 _ZN6muscle10g_bVersionE@Base 3.7+4565
 _ZN6muscle10ptrBestMSAE@Base 3.7+4565
 _ZN6muscle11AlignSubFamERNS_7SeqVectERKNS_4TreeEjRNS_3MSAE@Base 3.7+4565
 _ZN6muscle11AssertMSAEqERKNS_3MSAES2_@Base 3.7+4565
 _ZN6muscle11CheckMemUseEv@Base 3.7+4565
 _ZN6muscle11ClustSetMSA11ComputeDistERKNS_5ClustEjj@Base 3.7+4565
 _ZN6muscle11ClustSetMSA11GetLeafNameEj@Base 3.7+4565
 _ZN6muscle11ClustSetMSA12GetLeafCountEv@Base 3.7+4565
 _ZN6muscle11ClustSetMSA9GetLeafIdEj@Base 3.7+4565
 _ZN6muscle11ClustSetMSA9JoinNodesERKNS_5ClustEjjjPdS4_@Base 3.7+4565
 _ZN6muscle11ClusterTree14AddToDisjointsEPNS_11ClusterNodeE@Base 3.7+4565
 _ZN6muscle11ClusterTree19DeleteFromDisjointsEPNS_11ClusterNodeE@Base 3.7+4565
 _ZN6muscle11ClusterTree6CreateERKNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle11ClusterTreeC1Ev@Base 3.7+4565
 _ZN6muscle11ClusterTreeC2Ev@Base 3.7+4565
 _ZN6muscle11ClusterTreeD0Ev@Base 3.7+4565
 _ZN6muscle11ClusterTreeD1Ev@Base 3.7+4565
 _ZN6muscle11ClusterTreeD2Ev@Base 3.7+4565
 _ZN6muscle11DiagOverlapERKNS_4DiagES2_@Base 3.7+4565
 _ZN6muscle11DistCalcMSA4InitERKNS_3MSAENS_8DISTANCEE@Base 3.7+4565
 _ZN6muscle11DistKmer4_6ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle11DistKmer6_6ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle11GetFastaSeqEP8_IO_FILEPjPPcb@Base 3.7+4565
 _ZN6muscle11GetMemUseMBEv@Base 3.7+4565
 _ZN6muscle11GlobalAlignEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle11ListProfileEPKNS_7ProfPosEjPKNS_3MSAE@Base 3.7+4565
 _ZN6muscle11MakeRootMSAERKNS_7SeqVectERKNS_4TreeEPNS_8ProgNodeERNS_3MSAE@Base 3.7+4565
 _ZN6muscle11MulEstringsEPKsS1_Ps@Base 3.7+4565
 _ZN6muscle11ObjScoreIdsERKNS_3MSAEPKjjS4_j@Base 3.7+4565
 _ZN6muscle11OnExceptionEv@Base 3.7+4565
 _ZN6muscle11ProbToScoreEf@Base 3.7+4565
 _ZN6muscle11RefineHorizERNS_3MSAERKNS_4TreeEjbb@Base 3.7+4565
 _ZN6muscle11RefineTreeEERNS_3MSAERKNS_7SeqVectERNS_4TreeEPNS_8ProgNodeE@Base 3.7+4565
 _ZN6muscle11SaveCmdLineEiPPc@Base 3.7+4565
 _ZN6muscle11ScoreToProbEf@Base 3.7+4565
 _ZN6muscle11ScoreToStrLEf@Base 3.7+4565
 _ZN6muscle11SetMaxItersEj@Base 3.7+4565
 _ZN6muscle11SetSeqStatsEjjj@Base 3.7+4565
 _ZN6muscle11SetTermGapsEPKNS_7ProfPosEj@Base 3.7+4565
 _ZN6muscle11TraceBackSWEPKNS_7ProfPosEjS2_jPKfS4_S4_jjRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle11TreeFromMSAERKNS_3MSAERNS_4TreeENS_7CLUSTERENS_8DISTANCEENS_4ROOTEPKc@Base 3.7+4565
 _ZN6muscle11WeightToStrEf@Base 3.7+4565
 _ZN6muscle11g_AlignCharE@Base 3.7+4565
 _ZN6muscle11g_AlphaSizeE@Base 3.7+4565
 _ZN6muscle11g_Distance1E@Base 3.7+4565
 _ZN6muscle11g_Distance2E@Base 3.7+4565
 _ZN6muscle11g_bMakeTreeE@Base 3.7+4565
 _ZN6muscle11g_bTomHydroE@Base 3.7+4565
 _ZN6muscle11g_uMaxItersE@Base 3.7+4565
 _ZN6muscle11g_uWindowToE@Base 3.7+4565
 _ZN6muscle11g_ulMaxSecsE@Base 3.7+4565
 _ZN6muscle12AlignTwoMSAsERKNS_3MSAES2_RS0_RNS_6PWPathEbb@Base 3.7+4565
 _ZN6muscle12AssignColorsERKNS_3MSAEPPi@Base 3.7+4565
 _ZN6muscle12BitTraceBackEPPcjjcRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle12CLUSTERToStrENS_7CLUSTERE@Base 3.7+4565
 _ZN6muscle12CLUSTER_OptsE@Base 3.7+4565
 _ZN6muscle12CheckMaxTimeEv@Base 3.7+4565
 _ZN6muscle12ColsToRangesEPKjjjPNS_5RangeE@Base 3.7+4565
 _ZN6muscle12DPRegionList3AddERKNS_8DPRegionE@Base 3.7+4565
 _ZN6muscle12DiagOverlapAERKNS_4DiagES2_@Base 3.7+4565
 _ZN6muscle12DiagOverlapBERKNS_4DiagES2_@Base 3.7+4565
 _ZN6muscle12DiffObjScoreERKNS_3MSAERKNS_6PWPathEPKjjS2_S5_S7_j@Base 3.7+4565
 _ZN6muscle12DistKbit20_3ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle12DistKmer20_3ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle12DistPWKimuraERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle12FastDistKmerERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle12FindDiagsNucEPKNS_7ProfPosEjS2_jRNS_8DiagListE@Base 3.7+4565
 _ZN6muscle12FreeDPMemSPNEv@Base 3.7+4565
 _ZN6muscle12GetRAMSizeMBEv@Base 3.7+4565
 _ZN6muscle12GetScoreDistERKNS_3MSAEjj@Base 3.7+4565
 _ZN6muscle12GetStartTimeEv@Base 3.7+4565
 _ZN6muscle12GetTimeAsStrEv@Base 3.7+4565
 _ZN6muscle12LINKAGEToStrENS_7LINKAGEE@Base 3.7+4565
 _ZN6muscle12LINKAGE_OptsE@Base 3.7+4565
 _ZN6muscle12ListFlagOptsEv@Base 3.7+4565
 _ZN6muscle12MaxSecsToStrEv@Base 3.7+4565
 _ZN6muscle12MuscleOutputERNS_3MSAE@Base 3.7+4565
 _ZN6muscle12NameFromPathEPKcPcj@Base 3.7+4565
 _ZN6muscle12PPSCOREToStrENS_7PPSCOREE@Base 3.7+4565
 _ZN6muscle12PPSCORE_OptsE@Base 3.7+4565
 _ZN6muscle12PhyEnumEdgesERKNS_4TreeERNS_16PhyEnumEdgeStateE@Base 3.7+4565
 _ZN6muscle12RealignDiffsERKNS_3MSAERKNS_4TreeEPKjRS0_@Base 3.7+4565
 _ZN6muscle12ResidueGroupE@Base 3.7+4565
 _ZN6muscle12SEQTYPEToStrENS_7SEQTYPEE@Base 3.7+4565
 _ZN6muscle12SEQTYPE_OptsE@Base 3.7+4565
 _ZN6muscle12ScoreHistory8SetScoreEjjbf@Base 3.7+4565
 _ZN6muscle12ScoreHistoryC1Ejj@Base 3.7+4565
 _ZN6muscle12ScoreHistoryC2Ejj@Base 3.7+4565
 _ZN6muscle12ScoreHistoryD1Ev@Base 3.7+4565
 _ZN6muscle12ScoreHistoryD2Ev@Base 3.7+4565
 _ZN6muscle12SetStartTimeEv@Base 3.7+4565
 _ZN6muscle12ShortestPathERNS_8DistFuncEj@Base 3.7+4565
 _ZN6muscle12StrToCLUSTEREPKc@Base 3.7+4565
 _ZN6muscle12StrToLINKAGEEPKc@Base 3.7+4565
 _ZN6muscle12StrToPPSCOREEPKc@Base 3.7+4565
 _ZN6muscle12StrToSEQTYPEEPKc@Base 3.7+4565
 _ZN6muscle12TermGapScoreEb@Base 3.7+4565
 _ZN6muscle12TestEstringsEv@Base 3.7+4565
 _ZN6muscle12VectorIsZeroEPKdj@Base 3.7+4565
 _ZN6muscle12VectorIsZeroEPKfj@Base 3.7+4565
 _ZN6muscle12WindowSmoothEPKfjjPfd@Base 3.7+4565
 _ZN6muscle12g_SeqWeight1E@Base 3.7+4565
 _ZN6muscle12g_SeqWeight2E@Base 3.7+4565
 _ZN6muscle12g_bClwStrictE@Base 3.7+4565
 _ZN6muscle13AlignTwoProfsEPKNS_7ProfPosEjfS2_jfRNS_6PWPathEPPS0_Pj@Base 3.7+4565
 _ZN6muscle13AssertProfsEqEPKNS_7ProfPosEjS2_j@Base 3.7+4565
 _ZN6muscle13ConsensusCharERKNS_7ProfPosE@Base 3.7+4565
 _ZN6muscle13DISTANCEToStrENS_8DISTANCEE@Base 3.7+4565
 _ZN6muscle13DISTANCE_OptsE@Base 3.7+4565
 _ZN6muscle13DistUnalignedERKNS_7SeqVectENS_8DISTANCEERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle13DoubleToScoreEd@Base 3.7+4565
 _ZN6muscle13GlobalAlignLEEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle13GlobalAlignSPEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle13GlobalAlignSSERKNS_3SeqES2_RNS_6PWPathE@Base 3.7+4565
 _ZN6muscle13IsHydrophilicEPKf@Base 3.7+4565
 _ZN6muscle13IsHydrophobicEPKf@Base 3.7+4565
 _ZN6muscle13LengthEstringEPKs@Base 3.7+4565
 _ZN6muscle13MergeBestColsEPKfPKjjjPjS4_@Base 3.7+4565
 _ZN6muscle13OBJSCOREToStrENS_8OBJSCOREE@Base 3.7+4565
 _ZN6muscle13OBJSCORE_OptsE@Base 3.7+4565
 _ZN6muscle13OnOutOfMemoryEv@Base 3.7+4565
 _ZN6muscle13PhyEnumEdgesRERKNS_4TreeERNS_16PhyEnumEdgeStateE@Base 3.7+4565
 _ZN6muscle13ProcessArgStrEPKc@Base 3.7+4565
 _ZN6muscle13RealignDiffsEERKNS_3MSAERKNS_7SeqVectERKNS_4TreeES8_PKjRS0_PNS_8ProgNodeE@Base 3.7+4565
 _ZN6muscle13RefineSubfamsERNS_3MSAERKNS_4TreeEj@Base 3.7+4565
 _ZN6muscle13ScoreProfPos2ERKNS_7ProfPosES2_@Base 3.7+4565
 _ZN6muscle13SetMuscleTreeERKNS_4TreeE@Base 3.7+4565
 _ZN6muscle13SetNewHandlerEv@Base 3.7+4565
 _ZN6muscle13StrToDISTANCEEPKc@Base 3.7+4565
 _ZN6muscle13StrToOBJSCOREEPKc@Base 3.7+4565
 _ZN6muscle13StrToTERMGAPSEPKc@Base 3.7+4565
 _ZN6muscle13TERMGAPSToStrENS_8TERMGAPSE@Base 3.7+4565
 _ZN6muscle13TERMGAPS_OptsE@Base 3.7+4565
 _ZN6muscle13TestDiffPathsEv@Base 3.7+4565
 _ZN6muscle13dPeakMemUseMBE@Base 3.7+4565
 _ZN6muscle13g_SPScoreGapsE@Base 3.7+4565
 _ZN6muscle13g_UnalignCharE@Base 3.7+4565
 _ZN6muscle13g_bAnchoredPPE@Base 3.7+4565
 _ZN6muscle13g_scoreCenterE@Base 3.7+4565
 _ZN6muscle13g_uDiagMarginE@Base 3.7+4565
 _ZN6muscle13g_uSaveWindowE@Base 3.7+4565
 _ZN6muscle13g_uWindowFromE@Base 3.7+4565
 _ZN6muscle13ptrStartBreakE@Base 3.7+4565
 _ZN6muscle14Call_MY_ASSERTEPKcibS1_@Base 3.7+4565
 _ZN6muscle14DeleteProgNodeERNS_8ProgNodeE@Base 3.7+4565
 _ZN6muscle14DiagCompatibleERKNS_4DiagES2_@Base 3.7+4565
 _ZN6muscle14DoubleToWeightEd@Base 3.7+4565
 _ZN6muscle14EstringNewCopyEPKs@Base 3.7+4565
 _ZN6muscle14EstringsToPathEPKsS1_RNS_6PWPathE@Base 3.7+4565
 _ZN6muscle14FastScorePath2EPKNS_7ProfPosEjS2_jRKNS_6PWPathE@Base 3.7+4565
 _ZN6muscle14FindAnchorColsERKNS_3MSAEPjS3_@Base 3.7+4565
 _ZN6muscle14GetGotohLengthERKNS_4TreeEjj@Base 3.7+4565
 _ZN6muscle14GlobalAlignSPNEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle14IsValidIntegerEPKc@Base 3.7+4565
 _ZN6muscle14MSASubsetByIdsERKNS_3MSAEPKjjRS0_@Base 3.7+4565
 _ZN6muscle14MissingCommandEv@Base 3.7+4565
 _ZN6muscle14PAM200NoCenterE@Base 3.7+4565
 _ZN6muscle14PathToEstringsERKNS_6PWPathEPPsS4_@Base 3.7+4565
 _ZN6muscle14PhyEnumBiPartsERKNS_4TreeERNS_16PhyEnumEdgeStateEPjS5_S5_S5_@Base 3.7+4565
 _ZN6muscle14ProcessArgVectEiPPc@Base 3.7+4565
 _ZN6muscle14ProfileFromMSAERKNS_3MSAE@Base 3.7+4565
 _ZN6muscle14ProfileProfileERNS_3MSAES1_S1_@Base 3.7+4565
 _ZN6muscle14SEQWEIGHTToStrENS_9SEQWEIGHTE@Base 3.7+4565
 _ZN6muscle14SEQWEIGHT_OptsE@Base 3.7+4565
 _ZN6muscle14SeqVectFromMSAERKNS_3MSAERNS_7SeqVectE@Base 3.7+4565
 _ZN6muscle14StrToSEQWEIGHTEPKc@Base 3.7+4565
 _ZN6muscle14WeightToDoubleEf@Base 3.7+4565
 _ZN6muscle14WriteScoreFileERKNS_3MSAE@Base 3.7+4565
 _ZN6muscle14g_CharToLetterE@Base 3.7+4565
 _ZN6muscle14g_LetterToCharE@Base 3.7+4565
 _ZN6muscle14g_bClusterOnlyE@Base 3.7+4565
 _ZN6muscle14g_dHydroFactorE@Base 3.7+4565
 _ZN6muscle14g_scoreGapOpenE@Base 3.7+4565
 _ZN6muscle15ClusterByHeightERKNS_4TreeEdPjS3_@Base 3.7+4565
 _ZN6muscle15CommonKmerCountEPKhjS1_S1_j@Base 3.7+4565
 _ZN6muscle15DistPWScoreDistERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565
 _ZN6muscle15GetGonnetMatrixEj@Base 3.7+4565
 _ZN6muscle15GetLetterScoresERKNS_3MSAEPf@Base 3.7+4565
 _ZN6muscle15GetPeakMemUseMBEv@Base 3.7+4565
 _ZN6muscle15GetWildcardCharEv@Base 3.7+4565
 _ZN6muscle15ListDiagSavingsEv@Base 3.7+4565
 _ZN6muscle15ListVertSavingsEjjPKNS_5RangeEj@Base 3.7+4565
 _ZN6muscle15MSAFromColRangeERKNS_3MSAEjjRS0_@Base 3.7+4565
 _ZN6muscle15MSAFromSeqRangeERKNS_3MSAEjjRS0_@Base 3.7+4565
 _ZN6muscle15ObjScoreSPDimerERKNS_3MSAE@Base 3.7+4565
 _ZN6muscle15ScoreProfPos2LAERKNS_7ProfPosES2_@Base 3.7+4565
 _ZN6muscle15ScoreProfPos2NSERKNS_7ProfPosES2_@Base 3.7+4565
 _ZN6muscle15ScoreProfPos2SPERKNS_7ProfPosES2_@Base 3.7+4565
 _ZN6muscle15SetListFileNameEPKcb@Base 3.7+4565
 _ZN6muscle15SetProgressDescEPKc@Base 3.7+4565
 _ZN6muscle15StripGapColumnsERNS_3MSAE@Base 3.7+4565
 _ZN6muscle15StripWhitespaceEPc@Base 3.7+4565
 _ZN6muscle15TraceBackToPathEPPijjRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle15TreeFromSeqVectERKNS_7SeqVectERNS_4TreeENS_7CLUSTERENS_8DISTANCEENS_4ROOTEPKc@Base 3.7+4565
 _ZN6muscle15g_IsResidueCharE@Base 3.7+4565
 _ZN6muscle15g_bKeepSimpleDPE@Base 3.7+4565
 _ZN6muscle15g_bTracePPScoreE@Base 3.7+4565
 _ZN6muscle15g_pstrFileName1E@Base 3.7+4565
 _ZN6muscle15g_pstrFileName2E@Base 3.7+4565
 _ZN6muscle15g_scoreGapAmbigE@Base 3.7+4565
 _ZN6muscle15g_scoreGapOpen2E@Base 3.7+4565
 _ZN6muscle15g_uMaxDiagBreakE@Base 3.7+4565
 _ZN6muscle15g_uRefineWindowE@Base 3.7+4565
 _ZN6muscle15g_uWindowOffsetE@Base 3.7+4565
 _ZN6muscle16DeleteGappedColsERNS_3MSAE@Base 3.7+4565
 _ZN6muscle16ElapsedTimeAsStrEv@Base 3.7+4565
 _ZN6muscle16FindAnchorColsPPERKNS_3MSAES2_PjS3_@Base 3.7+4565
 _ZN6muscle16GetCheckMemUseMBEv@Base 3.7+4565
 _ZN6muscle16GetGonnetGapOpenEj@Base 3.7+4565
 _ZN6muscle16GlobalAlignDiagsEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle16GlobalAlignDimerEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle16IsValidFloatCharEc@Base 3.7+4565
 _ZN6muscle16LeafIndexesToIdsERKNS_4TreeEPKjjPj@Base 3.7+4565
 _ZN6muscle16LetterObjScoreXPERKNS_3MSAES2_Pf@Base 3.7+4565
 _ZN6muscle16MSAFromSeqSubsetERKNS_3MSAEPKjjRS0_@Base 3.7+4565
 _ZN6muscle16ObjScoreDP_ProfsEPKNS_7ProfPosES2_jPf@Base 3.7+4565
 _ZN6muscle16PctIdToMAFFTDistEd@Base 3.7+4565
 _ZN6muscle16ProgAlignSubFamsEv@Base 3.7+4565
 _ZN6muscle16ProgressiveAlignERKNS_7SeqVectERKNS_4TreeERNS_3MSAE@Base 3.7+4565
 _ZN6muscle16ScoreProfPos2SPNERKNS_7ProfPosES2_@Base 3.7+4565
 _ZN6muscle16ScoreSeqPairGapsERKNS_3MSAEjS2_j@Base 3.7+4565
 _ZN6muscle16ScoreSeqPairGapsERKNS_3MSAEjS2_jPf@Base 3.7+4565
 _ZN6muscle16SetInputFileNameEPKc@Base 3.7+4565
 _ZN6muscle16g_CharToLetterExE@Base 3.7+4565
 _ZN6muscle16g_IsWildcardCharE@Base 3.7+4565
 _ZN6muscle16g_LetterExToCharE@Base 3.7+4565
 _ZN6muscle16g_SPScoreLettersE@Base 3.7+4565
 _ZN6muscle16g_bUseTreeNoWarnE@Base 3.7+4565
 _ZN6muscle16g_pstrInFileNameE@Base 3.7+4565
 _ZN6muscle16g_pstrSPFileNameE@Base 3.7+4565
 _ZN6muscle16g_ptrPPScoreMSA1E@Base 3.7+4565
 _ZN6muscle16g_ptrPPScoreMSA2E@Base 3.7+4565
 _ZN6muscle16g_ptrScoreMatrixE@Base 3.7+4565
 _ZN6muscle16g_scoreGapExtendE@Base 3.7+4565
 _ZN6muscle16g_uAnchorSpacingE@Base 3.7+4565
 _ZN6muscle16g_uMinDiagLengthE@Base 3.7+4565
 _ZN6muscle17BLOSUM62_ExpectedE@Base 3.7+4565
 _ZN6muscle17FindBestColsGradeEPKfjdPjS2_@Base 3.7+4565
 _ZN6muscle17GlobalAlignSimpleEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle17IsValidIdentifierEPKc@Base 3.7+4565
 _ZN6muscle17KimuraDistToPctIdEd@Base 3.7+4565
 _ZN6muscle17ProgressStepsDoneEv@Base 3.7+4565
 _ZN6muscle17ProgressiveAlignEERKNS_7SeqVectERKNS_4TreeERNS_3MSAE@Base 3.7+4565
 _ZN6muscle17SetOutputFileNameEPKc@Base 3.7+4565
 _ZN6muscle17TrimLeadingBlanksEPc@Base 3.7+4565
 _ZN6muscle17g_bProfileOnStdInE@Base 3.7+4565
 _ZN6muscle17g_dMinSmoothScoreE@Base 3.7+4565
 _ZN6muscle17g_pstrOutFileNameE@Base 3.7+4565
 _ZN6muscle17g_scoreGapExtend2E@Base 3.7+4565
 _ZN6muscle17g_uMaxSubFamCountE@Base 3.7+4565
 _ZN6muscle17g_uTreeSplitNode1E@Base 3.7+4565
 _ZN6muscle17g_uTreeSplitNode2E@Base 3.7+4565
 _ZN6muscle18ApplyMinEdgeLengthERNS_4TreeEd@Base 3.7+4565
 _ZN6muscle18GetGonnetGapExtendEj@Base 3.7+4565
 _ZN6muscle18GetLeavesExcludingERKNS_4TreeEjjPjS3_@Base 3.7+4565
 _ZN6muscle18GetSeqWeightMethodEv@Base 3.7+4565
 _ZN6muscle18GlobalAlignNoDiagsEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle18MakeRootMSABrennerERNS_7SeqVectERKNS_4TreeEPNS_8ProgNodeERNS_3MSAE@Base 3.7+4565
 _ZN6muscle18PctIdToHeightMAFFTEd@Base 3.7+4565
 _ZN6muscle18SetSeqWeightMethodENS_9SEQWEIGHTE@Base 3.7+4565
 _ZN6muscle18TrimTrailingBlanksEPc@Base 3.7+4565
 _ZN6muscle18g_bCatchExceptionsE@Base 3.7+4565
 _ZN6muscle18g_bNormalizeCountsE@Base 3.7+4565
 _ZN6muscle18g_dMinBestColScoreE@Base 3.7+4565
 _ZN6muscle18g_dSmoothScoreCeilE@Base 3.7+4565
 _ZN6muscle18g_scoreAmbigFactorE@Base 3.7+4565
 _ZN6muscle19CalcClustalWWeightsERKNS_4TreeEPf@Base 3.7+4565
 _ZN6muscle19CalcThreeWayWeightsERKNS_4TreeEjjPf@Base 3.7+4565
 _ZN6muscle19NormalizeUnlessZeroEPfj@Base 3.7+4565
 _ZN6muscle19PctIdToHeightKimuraEd@Base 3.7+4565
 _ZN6muscle19ProfScoresFromFreqsEPNS_7ProfPosEj@Base 3.7+4565
 _ZN6muscle19ScoreSeqPairLettersERKNS_3MSAEjS2_j@Base 3.7+4565
 _ZN6muscle19ScoreSeqPairLettersERKNS_3MSAEjS2_jPf@Base 3.7+4565
 _ZN6muscle19SetCurrentAlignmentERNS_3MSAE@Base 3.7+4565
 _ZN6muscle19SetMSAWeightsMuscleERNS_3MSAE@Base 3.7+4565
 _ZN6muscle19g_pstrProf1FileNameE@Base 3.7+4565
 _ZN6muscle19g_pstrProf2FileNameE@Base 3.7+4565
 _ZN6muscle19g_pstrScoreFileNameE@Base 3.7+4565
 _ZN6muscle20ClusterBySubfamCountERKNS_4TreeEjPjS3_@Base 3.7+4565
 _ZN6muscle20InvalidLetterWarningEcc@Base 3.7+4565
 _ZN6muscle20IsValidSignedIntegerEPKc@Base 3.7+4565
 _ZN6muscle20MSAColIsConservativeERKNS_3MSAEj@Base 3.7+4565
 _ZN6muscle20PrepareMSAforScoringERNS_3MSAE@Base 3.7+4565
 _ZN6muscle20ReportInvalidLettersEv@Base 3.7+4565
 _ZN6muscle20SaveCurrentAlignmentEv@Base 3.7+4565
 _ZN6muscle20g_bPrecompiledCenterE@Base 3.7+4565
 _ZN6muscle20g_pstrClwOutFileNameE@Base 3.7+4565
 _ZN6muscle20g_pstrMSFOutFileNameE@Base 3.7+4565
 _ZN6muscle20g_pstrMatrixFileNameE@Base 3.7+4565
 _ZN6muscle21AlignTwoMSAsGivenPathERKNS_6PWPathERKNS_3MSAES5_RS3_@Base 3.7+4565
 _ZN6muscle21g_pstrDistMxFileName1E@Base 3.7+4565
 _ZN6muscle21g_pstrDistMxFileName2E@Base 3.7+4565
 _ZN6muscle21g_pstrHTMLOutFileNameE@Base 3.7+4565
 _ZN6muscle21g_pstrPHYIOutFileNameE@Base 3.7+4565
 _ZN6muscle21g_pstrPHYSOutFileNameE@Base 3.7+4565
 _ZN6muscle21g_pstrUseTreeFileNameE@Base 3.7+4565
 _ZN6muscle21g_uMaxTreeRefineItersE@Base 3.7+4565
 _ZN6muscle21g_uSmoothWindowLengthE@Base 3.7+4565
 _ZN6muscle22AlignTwoProfsGivenPathERKNS_6PWPathEPKNS_7ProfPosEjfS5_jfPPS3_Pj@Base 3.7+4565
 _ZN6muscle22AnchoredProfileProfileERNS_3MSAES1_S1_@Base 3.7+4565
 _ZN6muscle22DiagListToDPRegionListERKNS_8DiagListERNS_12DPRegionListEjj@Base 3.7+4565
 _ZN6muscle22GetMuscleSeqWeightByIdEj@Base 3.7+4565
 _ZN6muscle22TreeNeededForWeightingENS_9SEQWEIGHTE@Base 3.7+4565
 _ZN6muscle22g_pstrFASTAOutFileNameE@Base 3.7+4565
 _ZN6muscle22g_uRefineHeightSubtreeE@Base 3.7+4565
 _ZN6muscle23AlignTwoMSAsGivenPathSWERKNS_6PWPathERKNS_3MSAES5_RS3_@Base 3.7+4565
 _ZN6muscle23CalcThreeWayEdgeWeightsERKNS_4TreeEPPf@Base 3.7+4565
 _ZN6muscle23ResidueGroupFromFCountsEPKf@Base 3.7+4565
 _ZN6muscle23g_uHydrophobicRunLengthE@Base 3.7+4565
 _ZN6muscle24SetClustalWWeightsMuscleERNS_3MSAE@Base 3.7+4565
 _ZN6muscle24SetThreeWayWeightsMuscleERNS_3MSAE@Base 3.7+4565
 _ZN6muscle25ClearInvalidLetterWarningEv@Base 3.7+4565
 _ZN6muscle25SetProfileProfileAlphabetERNS_3MSAES1_@Base 3.7+4565
 _ZN6muscle26g_pstrClwStrictOutFileNameE@Base 3.7+4565
 _ZN6muscle27g_uRefineHeightSubtreeTotalE@Base 3.7+4565
 _ZN6muscle28AssertMSAEqIgnoreCaseAndGapsERKNS_3MSAES2_@Base 3.7+4565
 _ZN6muscle28g_pstrComputeWeightsFileNameE@Base 3.7+4565
 _ZN6muscle29GetInternalNodesInHeightOrderERKNS_4TreeEPj@Base 3.7+4565
 _ZN6muscle2SWEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle3LogEPKcz@Base 3.7+4565
 _ZN6muscle3MSA10SetIdCountEj@Base 3.7+4565
 _ZN6muscle3MSA10SetSeqNameEjPKc@Base 3.7+4565
 _ZN6muscle3MSA10m_uIdCountE@Base 3.7+4565
 _ZN6muscle3MSA11ExpandCacheEjj@Base 3.7+4565
 _ZN6muscle3MSA11SetSeqCountEj@Base 3.7+4565
 _ZN6muscle3MSA13DeleteColumnsEjj@Base 3.7+4565
 _ZN6muscle3MSA13FromFASTAFileERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle3MSA18SetClustalWWeightsERKNS_4TreeE@Base 3.7+4565
 _ZN6muscle3MSA4CopyERKS0_@Base 3.7+4565
 _ZN6muscle3MSA4FreeEv@Base 3.7+4565
 _ZN6muscle3MSA6SeqsEqERKS0_jS2_j@Base 3.7+4565
 _ZN6muscle3MSA7CopyColEjj@Base 3.7+4565
 _ZN6muscle3MSA7CopySeqEjRKS0_j@Base 3.7+4565
 _ZN6muscle3MSA7FromSeqERKNS_3SeqE@Base 3.7+4565
 _ZN6muscle3MSA7SetCharEjjc@Base 3.7+4565
 _ZN6muscle3MSA7SetSizeEjj@Base 3.7+4565
 _ZN6muscle3MSA8FixAlphaEv@Base 3.7+4565
 _ZN6muscle3MSA8FromFileERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle3MSA8SetSeqIdEjj@Base 3.7+4565
 _ZN6muscle3MSA8UnWeightEv@Base 3.7+4565
 _ZN6muscle3MSA9AppendSeqEPcjS1_@Base 3.7+4565
 _ZN6muscle3MSA9DeleteColEj@Base 3.7+4565
 _ZN6muscle3MSA9DeleteSeqEj@Base 3.7+4565
 _ZN6muscle3MSAC1Ev@Base 3.7+4565
 _ZN6muscle3MSAC2Ev@Base 3.7+4565
 _ZN6muscle3MSAD0Ev@Base 3.7+4565
 _ZN6muscle3MSAD1Ev@Base 3.7+4565
 _ZN6muscle3MSAD2Ev@Base 3.7+4565
 _ZN6muscle3RunEv@Base 3.7+4565
 _ZN6muscle3Seq10FromStringEPKcS2_@Base 3.7+4565
 _ZN6muscle3Seq12CopyReversedERKS0_@Base 3.7+4565
 _ZN6muscle3Seq13FromFASTAFileERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle3Seq22StripGapsAndWhitespaceEv@Base 3.7+4565
 _ZN6muscle3Seq4CopyERKS0_@Base 3.7+4565
 _ZN6muscle3Seq7SetNameEPKc@Base 3.7+4565
 _ZN6muscle3Seq7ToUpperEv@Base 3.7+4565
 _ZN6muscle3Seq8FixAlphaEv@Base 3.7+4565
 _ZN6muscle3Seq9StripGapsEv@Base 3.7+4565
 _ZN6muscle3SeqD0Ev@Base 3.7+4565
 _ZN6muscle3SeqD1Ev@Base 3.7+4565
 _ZN6muscle3SeqD2Ev@Base 3.7+4565
 _ZN6muscle3lp2Ed@Base 3.7+4565
 _ZN6muscle4BTEqEdd@Base 3.7+4565
 _ZN6muscle4DoSPEv@Base 3.7+4565
 _ZN6muscle4QuitEPKcz@Base 3.7+4565
 _ZN6muscle4RankEPKdPdj@Base 3.7+4565
 _ZN6muscle4RankEPKfPfj@Base 3.7+4565
 _ZN6muscle4TestEv@Base 3.7+4565
 _ZN6muscle4Tree11ExpandCacheEv@Base 3.7+4565
 _ZN6muscle4Tree11SetLeafNameEjPKc@Base 3.7+4565
 _ZN6muscle4Tree12AppendBranchEj@Base 3.7+4565
 _ZN6muscle4Tree12CreateRootedEv@Base 3.7+4565
 _ZN6muscle4Tree12OrientParentEjj@Base 3.7+4565
 _ZN6muscle4Tree13SetEdgeLengthEjjd@Base 3.7+4565
 _ZN6muscle4Tree14CreateUnrootedEd@Base 3.7+4565
 _ZN6muscle4Tree14UnrootFromFileEv@Base 3.7+4565
 _ZN6muscle4Tree16GetGroupFromFileERNS_8TextFileEjPd@Base 3.7+4565
 _ZN6muscle4Tree16RootUnrootedTreeENS_4ROOTE@Base 3.7+4565
 _ZN6muscle4Tree20UnrootByDeletingRootEv@Base 3.7+4565
 _ZN6muscle4Tree4CopyERKS0_@Base 3.7+4565
 _ZN6muscle4Tree5ClearEv@Base 3.7+4565
 _ZN6muscle4Tree6CreateEjjPKjS2_PKfS4_S2_PPc@Base 3.7+4565
 _ZN6muscle4Tree8FromFileERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle4Tree9FromClustERNS_5ClustE@Base 3.7+4565
 _ZN6muscle4Tree9InitCacheEj@Base 3.7+4565
 _ZN6muscle4Tree9PruneTreeERKS0_Pjj@Base 3.7+4565
 _ZN6muscle4Tree9SetLeafIdEjj@Base 3.7+4565
 _ZN6muscle4TreeD0Ev@Base 3.7+4565
 _ZN6muscle4TreeD1Ev@Base 3.7+4565
 _ZN6muscle4TreeD2Ev@Base 3.7+4565
 _ZN6muscle4log2Ed@Base 3.7+4565
 _ZN6muscle4pow2Ed@Base 3.7+4565
 _ZN6muscle5BreakEv@Base 3.7+4565
 _ZN6muscle5Clust10ChooseJoinEPjS1_PfS2_@Base 3.7+4565
 _ZN6muscle5Clust11ComputeDistEjj@Base 3.7+4565
 _ZN6muscle5Clust12SetLeafCountEj@Base 3.7+4565
 _ZN6muscle5Clust13CreateClusterEv@Base 3.7+4565
 _ZN6muscle5Clust16AddToClusterListEj@Base 3.7+4565
 _ZN6muscle5Clust16ComputeDistMAFFTEjj@Base 3.7+4565
 _ZN6muscle5Clust21ComputeDistMaxLinkageEjj@Base 3.7+4565
 _ZN6muscle5Clust21ComputeDistMinLinkageEjj@Base 3.7+4565
 _ZN6muscle5Clust21DeleteFromClusterListEj@Base 3.7+4565
 _ZN6muscle5Clust25ChooseJoinNearestNeighborEPjS1_PfS2_@Base 3.7+4565
 _ZN6muscle5Clust25ChooseJoinNeighborJoiningEPjS1_PfS2_@Base 3.7+4565
 _ZN6muscle5Clust25ComputeDistAverageLinkageEjj@Base 3.7+4565
 _ZN6muscle5Clust26ComputeDistNeighborJoiningEjj@Base 3.7+4565
 _ZN6muscle5Clust6CreateERNS_8ClustSetENS_7CLUSTERE@Base 3.7+4565
 _ZN6muscle5Clust7SetDistEjjf@Base 3.7+4565
 _ZN6muscle5Clust9JoinNodesEjjffj@Base 3.7+4565
 _ZN6muscle5ClustC1Ev@Base 3.7+4565
 _ZN6muscle5ClustC2Ev@Base 3.7+4565
 _ZN6muscle5ClustD0Ev@Base 3.7+4565
 _ZN6muscle5ClustD1Ev@Base 3.7+4565
 _ZN6muscle5ClustD2Ev@Base 3.7+4565
 _ZN6muscle5HydroEPNS_7ProfPosEj@Base 3.7+4565
 _ZN6muscle5IsDNAEc@Base 3.7+4565
 _ZN6muscle5IsRNAEc@Base 3.7+4565
 _ZN6muscle5LocalEv@Base 3.7+4565
 _ZN6muscle5UsageEv@Base 3.7+4565
 _ZN6muscle5g_DPDE@Base 3.7+4565
 _ZN6muscle5g_DPEE@Base 3.7+4565
 _ZN6muscle5g_DPIE@Base 3.7+4565
 _ZN6muscle5g_DPJE@Base 3.7+4565
 _ZN6muscle5g_DPME@Base 3.7+4565
 _ZN6muscle5g_TBDE@Base 3.7+4565
 _ZN6muscle5g_TBEE@Base 3.7+4565
 _ZN6muscle5g_TBIE@Base 3.7+4565
 _ZN6muscle5g_TBJE@Base 3.7+4565
 _ZN6muscle5g_TBME@Base 3.7+4565
 _ZN6muscle5g_bSWE@Base 3.7+4565
 _ZN6muscle6CorrelEPKdS1_j@Base 3.7+4565
 _ZN6muscle6CorrelEPKfS1_j@Base 3.7+4565
 _ZN6muscle6GetNANEv@Base 3.7+4565
 _ZN6muscle6MSACatERKNS_3MSAES2_RS0_@Base 3.7+4565
 _ZN6muscle6MUSCLEERNS_7SeqVectERNS_3MSAE@Base 3.7+4565
 _ZN6muscle6NUC_SPE@Base 3.7+4565
 _ZN6muscle6PAM200E@Base 3.7+4565
 _ZN6muscle6PWPath10AppendEdgeERKNS_6PWEdgeE@Base 3.7+4565
 _ZN6muscle6PWPath10AppendEdgeEcjj@Base 3.7+4565
 _ZN6muscle6PWPath10ExpandPathEj@Base 3.7+4565
 _ZN6muscle6PWPath11FromMSAPairERKNS_3MSAES3_@Base 3.7+4565
 _ZN6muscle6PWPath11PrependEdgeERKNS_6PWEdgeE@Base 3.7+4565
 _ZN6muscle6PWPath4CopyERKS0_@Base 3.7+4565
 _ZN6muscle6PWPath5ClearEv@Base 3.7+4565
 _ZN6muscle6PWPath7FromStrEPKc@Base 3.7+4565
 _ZN6muscle6PWPath8FromFileERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle6PWPathC1Ev@Base 3.7+4565
 _ZN6muscle6PWPathC2Ev@Base 3.7+4565
 _ZN6muscle6PWPathD0Ev@Base 3.7+4565
 _ZN6muscle6PWPathD1Ev@Base 3.7+4565
 _ZN6muscle6PWPathD2Ev@Base 3.7+4565
 _ZN6muscle6ProfDBEv@Base 3.7+4565
 _ZN6muscle6ReadMxERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle6RefineEv@Base 3.7+4565
 _ZN6muscle6SPTestEv@Base 3.7+4565
 _ZN6muscle6SubFamERKNS_4TreeEjPjS3_@Base 3.7+4565
 _ZN6muscle6SumLogEff@Base 3.7+4565
 _ZN6muscle6SumLogEfff@Base 3.7+4565
 _ZN6muscle6SumLogEffff@Base 3.7+4565
 _ZN6muscle6UPGMA2ERKNS_8DistCalcERNS_4TreeENS_7LINKAGEE@Base 3.7+4565
 _ZN6muscle6VecSumEPKdj@Base 3.7+4565
 _ZN6muscle6chkmemEPKc@Base 3.7+4565
 _ZN6muscle6g_argcE@Base 3.7+4565
 _ZN6muscle6g_argvE@Base 3.7+4565
 _ZN6muscle6g_bAlnE@Base 3.7+4565
 _ZN6muscle6g_bLowE@Base 3.7+4565
 _ZN6muscle6g_bMSFE@Base 3.7+4565
 _ZN6muscle6g_bPASE@Base 3.7+4565
 _ZN6muscle6g_dNANE@Base 3.7+4565
 _ZN6muscle7CreditsEv@Base 3.7+4565
 _ZN6muscle7FixRootERNS_4TreeENS_4ROOTE@Base 3.7+4565
 _ZN6muscle7FlagOptEPKc@Base 3.7+4565
 _ZN6muscle7IncIterEv@Base 3.7+4565
 (arch-bits=32)_ZN6muscle7MemPlusEjPc@Base 3.7+4565
 (arch-bits=64)_ZN6muscle7MemPlusEmPc@Base 3.7+4565
 _ZN6muscle7NWSmallEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565
 _ZN6muscle7PPScoreEv@Base 3.7+4565
 _ZN6muscle7ProfileEv@Base 3.7+4565
 _ZN6muscle7RefineWERKNS_3MSAERS0_@Base 3.7+4565
 _ZN6muscle7ScoreEqEff@Base 3.7+4565
 _ZN6muscle7SeqVect10GetSeqByIdEj@Base 3.7+4565
 _ZN6muscle7SeqVect13FromFASTAFileERNS_8TextFileE@Base 3.7+4565
 _ZN6muscle7SeqVect22StripGapsAndWhitespaceEv@Base 3.7+4565
 _ZN6muscle7SeqVect4CopyERKS0_@Base 3.7+4565
 _ZN6muscle7SeqVect5ClearEv@Base 3.7+4565
 _ZN6muscle7SeqVect6GetSeqEj@Base 3.7+4565
 _ZN6muscle7SeqVect7ToUpperEv@Base 3.7+4565
 _ZN6muscle7SeqVect8FixAlphaEv@Base 3.7+4565
 _ZN6muscle7SeqVect8PadToMSAERNS_3MSAE@Base 3.7+4565
 _ZN6muscle7SeqVect8SetSeqIdEjj@Base 3.7+4565
 _ZN6muscle7SeqVect9AppendSeqERKNS_3SeqE@Base 3.7+4565
 _ZN6muscle7SeqVect9StripGapsEv@Base 3.7+4565
 _ZN6muscle7SeqVectD0Ev@Base 3.7+4565
 _ZN6muscle7SeqVectD1Ev@Base 3.7+4565
 _ZN6muscle7SeqVectD2Ev@Base 3.7+4565
 _ZN6muscle7SetIterEj@Base 3.7+4565
 _ZN6muscle7VTML_LAE@Base 3.7+4565
 _ZN6muscle7VTML_SPE@Base 3.7+4565
 _ZN6muscle7VerboseEv@Base 3.7+4565
 _ZN6muscle7WarningEPKcz@Base 3.7+4565
 _ZN6muscle7g_AlphaE@Base 3.7+4565
 _ZN6muscle7g_Root1E@Base 3.7+4565
 _ZN6muscle7g_Root2E@Base 3.7+4565
 _ZN6muscle7g_bHTMLE@Base 3.7+4565
 _ZN6muscle7g_bPHYIE@Base 3.7+4565
 _ZN6muscle7g_bPHYSE@Base 3.7+4565
 _ZN6muscle7isidentEc@Base 3.7+4565
 _ZN6muscle7lp2FastEf@Base 3.7+4565
 _ZN6muscle7strsaveEPKc@Base 3.7+4565
 _ZN6muscle8BLOSUM62E@Base 3.7+4565
 _ZN6muscle8DiagList18DeleteIncompatibleEv@Base 3.7+4565
 _ZN6muscle8DiagList3AddERKNS_4DiagE@Base 3.7+4565
 _ZN6muscle8DiagList3AddEjjj@Base 3.7+4565
 _ZN6muscle8DiagList4CopyERKS0_@Base 3.7+4565
 _ZN6muscle8DiagList4SortEv@Base 3.7+4565
 _ZN6muscle8DiagList8FromPathERKNS_6PWPathE@Base 3.7+4565
 _ZN6muscle8DistFunc5SetIdEjj@Base 3.7+4565
 _ZN6muscle8DistFunc7SetDistEjjf@Base 3.7+4565
 _ZN6muscle8DistFunc7SetNameEjPKc@Base 3.7+4565
 _ZN6muscle8DistFunc8SetCountEj@Base 3.7+4565
 _ZN6muscle8DistFuncC1Ev@Base 3.7+4565
 _ZN6muscle8DistFuncC2Ev@Base 3.7+4565
 _ZN6muscle8DistFuncD0Ev@Base 3.7+4565
 _ZN6muscle8DistFuncD1Ev@Base 3.7+4565
 _ZN6muscle8DistFuncD2Ev@Base 3.7+4565
 _ZN6muscle8DoMuscleEv@Base 3.7+4565
 _ZN6muscle8DrawTreeERKNS_4TreeE@Base 3.7+4565
 _ZN6muscle8EdgeList3AddEjj@Base 3.7+4565
 _ZN6muscle8EdgeList4CopyERKS0_@Base 3.7+4565
 _ZN6muscle8EdgeList5ClearEv@Base 3.7+4565
 _ZN6muscle8EdgeList6ExpandEv@Base 3.7+4565
 _ZN6muscle8EdgeListC1Ev@Base 3.7+4565
 _ZN6muscle8EdgeListC2Ev@Base 3.7+4565
 _ZN6muscle8EdgeListD0Ev@Base 3.7+4565
 _ZN6muscle8EdgeListD1Ev@Base 3.7+4565
 _ZN6muscle8EdgeListD2Ev@Base 3.7+4565
 _ZN6muscle8FindRootERKNS_4TreeEPjS3_PdS4_NS_4ROOTE@Base 3.7+4565
 _ZN6muscle8IsNucleoEc@Base 3.7+4565
 _ZN6muscle8MHackEndERNS_3MSAE@Base 3.7+4565
 (arch-bits=32)_ZN6muscle8MemMinusEjPc@Base 3.7+4565
 (arch-bits=64)_ZN6muscle8MemMinusEmPc@Base 3.7+4565
 _ZN6muscle8MemToStrEd@Base 3.7+4565
 _ZN6muscle8ObjScoreERKNS_3MSAEPKjjS4_j@Base 3.7+4565
 _ZN6muscle8ProgressEPKcz@Base 3.7+4565
 _ZN6muscle8ProgressEjj@Base 3.7+4565
 _ZN6muscle8SetAlphaENS_5ALPHAE@Base 3.7+4565
 _ZN6muscle8TextFile10SkipWhiteXEv@Base 3.7+4565
 _ZN6muscle8TextFile11GetTrimLineEPcj@Base 3.7+4565
 _ZN6muscle8TextFile15GetNonblankCharERc@Base 3.7+4565
 _ZN6muscle8TextFile4InitEP8_IO_FILEPKc@Base 3.7+4565
 _ZN6muscle8TextFile4SkipEv@Base 3.7+4565
 _ZN6muscle8TextFile6GetPosEv@Base 3.7+4565
 _ZN6muscle8TextFile6RewindEv@Base 3.7+4565
 _ZN6muscle8TextFile6SetPosENS_11TEXTFILEPOSE@Base 3.7+4565
 _ZN6muscle8TextFile7GetCharERc@Base 3.7+4565
 _ZN6muscle8TextFile7GetLineEPcj@Base 3.7+4565
 _ZN6muscle8TextFile7PutCharEc@Base 3.7+4565
 _ZN6muscle8TextFile8GetCharXERc@Base 3.7+4565
 _ZN6muscle8TextFile8GetLineXEPcj@Base 3.7+4565
 _ZN6muscle8TextFile8GetTokenEPcjPKc@Base 3.7+4565
 _ZN6muscle8TextFile8SkipLineEv@Base 3.7+4565
 _ZN6muscle8TextFile9GetTokenXEPcjPKc@Base 3.7+4565
 _ZN6muscle8TextFile9PutFormatEPKcz@Base 3.7+4565
 _ZN6muscle8TextFile9PutStringEPKc@Base 3.7+4565
 _ZN6muscle8TextFile9SkipWhiteEv@Base 3.7+4565
 _ZN6muscle8TextFileC1EP8_IO_FILEPKc@Base 3.7+4565
 _ZN6muscle8TextFileC1EPKcb@Base 3.7+4565
 _ZN6muscle8TextFileC2EP8_IO_FILEPKc@Base 3.7+4565
 _ZN6muscle8TextFileC2EPKcb@Base 3.7+4565
 _ZN6muscle8TextFileD0Ev@Base 3.7+4565
 _ZN6muscle8TextFileD1Ev@Base 3.7+4565
 _ZN6muscle8TextFileD2Ev@Base 3.7+4565
 _ZN6muscle8TomHydroEPNS_7ProfPosEj@Base 3.7+4565
 _ZN6muscle8ValueOptEPKc@Base 3.7+4565
 _ZN6muscle8g_bDiagsE@Base 3.7+4565
 _ZN6muscle8g_bDimerE@Base 3.7+4565
 _ZN6muscle8g_bFASTAE@Base 3.7+4565
 _ZN6muscle8g_bQuietE@Base 3.7+4565
 _ZN6muscle8g_dSUEFFE@Base 3.7+4565
 _ZN6muscle8g_uMaxMBE@Base 3.7+4565
 _ZN6muscle8isidentfEc@Base 3.7+4565
 _ZN6muscle8lnTolog2Ed@Base 3.7+4565
 _ZN6muscle9AppendMSAERNS_3MSAERKS0_@Base 3.7+4565
 _ZN6muscle9BoolToStrEb@Base 3.7+4565
 _ZN6muscle9DiagBreakERKNS_4DiagES2_@Base 3.7+4565
 _ZN6muscle9DiffPathsERKNS_6PWPathES2_PjS3_S3_S3_@Base 3.7+4565
 _ZN6muscle9DiffTreesERKNS_4TreeES2_RS0_Pj@Base 3.7+4565
 _ZN6muscle9DoRefineWEv@Base 3.7+4565
 _ZN6muscle9EstringOpEPKsRKNS_3SeqERNS_3MSAE@Base 3.7+4565
 _ZN6muscle9EstringOpEPKsRKNS_3SeqERS2_@Base 3.7+4565
 _ZN6muscle9FindDiagsEPKNS_7ProfPosEjS2_jRNS_8DiagListE@Base 3.7+4565
 _ZN6muscle9GetCPUGHzEv@Base 3.7+4565
 _ZN6muscle9GetLeavesERKNS_4TreeEjPjS3_@Base 3.7+4565
 _ZN6muscle9JOINToStrENS_4JOINE@Base 3.7+4565
 _ZN6muscle9JOIN_OptsE@Base 3.7+4565
 _ZN6muscle9KmerToStrEj@Base 3.7+4565
 _ZN6muscle9MSAAppendERNS_3MSAERKS0_@Base 3.7+4565
 _ZN6muscle9NormalizeEPfj@Base 3.7+4565
 _ZN6muscle9NormalizeEPfjd@Base 3.7+4565
 _ZN6muscle9ROOTToStrENS_4ROOTE@Base 3.7+4565
 _ZN6muscle9ROOT_OptsE@Base 3.7+4565
 _ZN6muscle9ScoreGapsERKNS_3MSAEPKjj@Base 3.7+4565
 _ZN6muscle9SecsToStrEm@Base 3.7+4565
 _ZN6muscle9SetParamsEv@Base 3.7+4565
 _ZN6muscle9StabilizeERKNS_3MSAERS0_@Base 3.7+4565
 _ZN6muscle9StrToJOINEPKc@Base 3.7+4565
 _ZN6muscle9StrToROOTEPKc@Base 3.7+4565
 _ZN6muscle9StripGapsEPc@Base 3.7+4565
 _ZN6muscle9SumCountsEPKf@Base 3.7+4565
 _ZN6muscle9TraceBackEPKNS_7ProfPosEjS2_jPKfS4_S4_RNS_6PWPathE@Base 3.7+4565
 _ZN6muscle9VectorSetEPdjd@Base 3.7+4565
 _ZN6muscle9VectorSetEPfjf@Base 3.7+4565
 _ZN6muscle9g_PPScoreE@Base 3.7+4565
 _ZN6muscle9g_SeqTypeE@Base 3.7+4565
 _ZN6muscle9g_bDiags1E@Base 3.7+4565
 _ZN6muscle9g_bDiags2E@Base 3.7+4565
 _ZN6muscle9g_bProfDBE@Base 3.7+4565
 _ZN6muscle9g_bRefineE@Base 3.7+4565
 _ZN6muscle9g_bStableE@Base 3.7+4565
 _ZNK6muscle10DistCalcDF13CalcDistRangeEjPf@Base 3.7+4565
 _ZNK6muscle10DistCalcDF5GetIdEj@Base 3.7+4565
 _ZNK6muscle10DistCalcDF7GetNameEj@Base 3.7+4565
 _ZNK6muscle10DistCalcDF8GetCountEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode13GetLeftWeightEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode14GetClusterLeafEj@Base 3.7+4565
 _ZNK6muscle11ClusterNode14GetClusterSizeEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode14GetRightWeightEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode16GetClusterWeightEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode19GetLeftBranchWeightEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode20GetRightBranchWeightEv@Base 3.7+4565
 _ZNK6muscle11ClusterNode5LogMeEv@Base 3.7+4565
 _ZNK6muscle11ClusterTree5LogMeEv@Base 3.7+4565
 _ZNK6muscle11ClusterTree7GetRootEv@Base 3.7+4565
 _ZNK6muscle11DistCalcMSA13CalcDistRangeEjPf@Base 3.7+4565
 _ZNK6muscle11DistCalcMSA5GetIdEj@Base 3.7+4565
 _ZNK6muscle11DistCalcMSA7GetNameEj@Base 3.7+4565
 _ZNK6muscle11DistCalcMSA8GetCountEv@Base 3.7+4565
 _ZNK6muscle12DPRegionList5LogMeEv@Base 3.7+4565
 _ZNK6muscle12DPRegionList9GetDPAreaEv@Base 3.7+4565
 _ZNK6muscle12DistCalcTest13CalcDistRangeEjPf@Base 3.7+4565
 _ZNK6muscle12DistCalcTest5GetIdEj@Base 3.7+4565
 _ZNK6muscle12DistCalcTest7GetNameEj@Base 3.7+4565
 _ZNK6muscle12DistCalcTest8GetCountEv@Base 3.7+4565
 _ZNK6muscle12ScoreHistory5LogMeEv@Base 3.7+4565
 _ZNK6muscle12ScoreHistory8GetScoreEjjbb@Base 3.7+4565
 _ZNK6muscle3MSA10GetAvgConsEv@Base 3.7+4565
 _ZNK6muscle3MSA10GetSeqNameEj@Base 3.7+4565
 _ZNK6muscle3MSA10GuessAlphaEv@Base 3.7+4565
 _ZNK6muscle3MSA10IsEmptyColEj@Base 3.7+4565
 _ZNK6muscle3MSA10IsWildcardEjj@Base 3.7+4565
 _ZNK6muscle3MSA10ToHTMLFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3MSA10WeightsSetEv@Base 3.7+4565
 _ZNK6muscle3MSA11CalcWeightsEv@Base 3.7+4565
 _ZNK6muscle3MSA11GetLetterExEjj@Base 3.7+4565
 _ZNK6muscle3MSA11GetSeqIndexEPKcPj@Base 3.7+4565
 _ZNK6muscle3MSA11GetSeqIndexEj@Base 3.7+4565
 _ZNK6muscle3MSA11GetSeqIndexEjPj@Base 3.7+4565
 _ZNK6muscle3MSA11IsGapColumnEj@Base 3.7+4565
 _ZNK6muscle3MSA11ListWeightsEv@Base 3.7+4565
 _ZNK6muscle3MSA11ToFASTAFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3MSA12ColumnHasGapEj@Base 3.7+4565
 _ZNK6muscle3MSA12GetCharCountEjj@Base 3.7+4565
 _ZNK6muscle3MSA12GetSeqBufferEj@Base 3.7+4565
 _ZNK6muscle3MSA12GetSeqLengthEj@Base 3.7+4565
 _ZNK6muscle3MSA12GetSeqWeightEj@Base 3.7+4565
 _ZNK6muscle3MSA12SetSeqWeightEjf@Base 3.7+4565
 _ZNK6muscle3MSA13IsLegalLetterEj@Base 3.7+4565
 _ZNK6muscle3MSA13SetGSCWeightsEv@Base 3.7+4565
 _ZNK6muscle3MSA14GetGCGCheckSumEj@Base 3.7+4565
 _ZNK6muscle3MSA16NormalizeWeightsEf@Base 3.7+4565
 _ZNK6muscle3MSA17CalcBLOSUMWeightsERNS_11ClusterTreeE@Base 3.7+4565
 _ZNK6muscle3MSA17GetTotalSeqWeightEv@Base 3.7+4565
 _ZNK6muscle3MSA17SetSubtreeWeight2EPKNS_11ClusterNodeE@Base 3.7+4565
 _ZNK6muscle3MSA17SetUniformWeightsEv@Base 3.7+4565
 _ZNK6muscle3MSA18GetPctIdentityPairEjj@Base 3.7+4565
 _ZNK6muscle3MSA18SetHenikoffWeightsEv@Base 3.7+4565
 _ZNK6muscle3MSA18UniqueResidueTypesEj@Base 3.7+4565
 _ZNK6muscle3MSA19SetBLOSUMNodeWeightEPKNS_11ClusterNodeEd@Base 3.7+4565
 _ZNK6muscle3MSA19SetSubtreeGSCWeightEPNS_11ClusterNodeE@Base 3.7+4565
 _ZNK6muscle3MSA19ToPhySequentialFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3MSA20SetHenikoffWeightsPBEv@Base 3.7+4565
 _ZNK6muscle3MSA20ToPhyInterleavedFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3MSA22CalcHenikoffWeightsColEj@Base 3.7+4565
 _ZNK6muscle3MSA22SetBLOSUMSubtreeWeightEPKNS_11ClusterNodeEd@Base 3.7+4565
 _ZNK6muscle3MSA23GetPctGroupIdentityPairEjj@Base 3.7+4565
 _ZNK6muscle3MSA24CalcHenikoffWeightsColPBEj@Base 3.7+4565
 _ZNK6muscle3MSA25AlignedColIndexToColIndexEj@Base 3.7+4565
 _ZNK6muscle3MSA27GetFractionalWeightedCountsEjbPfS1_S1_S1_S1_S1_S1_S1_S1_@Base 3.7+4565
 _ZNK6muscle3MSA5IsGapEjj@Base 3.7+4565
 _ZNK6muscle3MSA5LogMeEv@Base 3.7+4565
 _ZNK6muscle3MSA6GetOccEj@Base 3.7+4565
 _ZNK6muscle3MSA6GetSeqEjRNS_3SeqE@Base 3.7+4565
 _ZNK6muscle3MSA6HasGapEv@Base 3.7+4565
 _ZNK6muscle3MSA6ToFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3MSA7GetCharEjj@Base 3.7+4565
 _ZNK6muscle3MSA7GetConsEj@Base 3.7+4565
 _ZNK6muscle3MSA7GetPWIDEjjPdPj@Base 3.7+4565
 _ZNK6muscle3MSA8GetSeqIdEj@Base 3.7+4565
 _ZNK6muscle3MSA8IsGapSeqEj@Base 3.7+4565
 _ZNK6muscle3MSA9GetLetterEjj@Base 3.7+4565
 _ZNK6muscle3MSA9ToAlnFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3MSA9ToMSFFileERNS_8TextFileEPKc@Base 3.7+4565
 _ZNK6muscle3Seq11ToFASTAFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle3Seq12EqIgnoreCaseERKS0_@Base 3.7+4565
 _ZNK6muscle3Seq15ExtractUngappedERNS_3MSAE@Base 3.7+4565
 _ZNK6muscle3Seq17GetUngappedLengthEv@Base 3.7+4565
 _ZNK6muscle3Seq19EqIgnoreCaseAndGapsERKS0_@Base 3.7+4565
 _ZNK6muscle3Seq2EqERKS0_@Base 3.7+4565
 _ZNK6muscle3Seq5LogMeEv@Base 3.7+4565
 _ZNK6muscle3Seq6HasGapEv@Base 3.7+4565
 _ZNK6muscle3Seq9GetLetterEj@Base 3.7+4565
 _ZNK6muscle4Tree11GetLeafNameEj@Base 3.7+4565
 _ZNK6muscle4Tree11GetNeighborEjj@Base 3.7+4565
 _ZNK6muscle4Tree12ValidateNodeEj@Base 3.7+4565
 _ZNK6muscle4Tree13GetEdgeLengthEjj@Base 3.7+4565
 _ZNK6muscle4Tree13GetLeafParentEj@Base 3.7+4565
 _ZNK6muscle4Tree13GetNodeHeightEj@Base 3.7+4565
 _ZNK6muscle4Tree13HasEdgeLengthEjj@Base 3.7+4565
 _ZNK6muscle4Tree16GetFirstNeighborEjj@Base 3.7+4565
 _ZNK6muscle4Tree16GetLeafNodeIndexEPKc@Base 3.7+4565
 _ZNK6muscle4Tree16ToFileNodeRootedERNS_8TextFileEj@Base 3.7+4565
 _ZNK6muscle4Tree17GetAnyNonLeafNodeEv@Base 3.7+4565
 _ZNK6muscle4Tree17GetSecondNeighborEjj@Base 3.7+4565
 _ZNK6muscle4Tree18AssertAreNeighborsEjj@Base 3.7+4565
 _ZNK6muscle4Tree18NextDepthFirstNodeEj@Base 3.7+4565
 _ZNK6muscle4Tree18ToFileNodeUnrootedERNS_8TextFileEjj@Base 3.7+4565
 _ZNK6muscle4Tree19FirstDepthFirstNodeEv@Base 3.7+4565
 _ZNK6muscle4Tree19NextDepthFirstNodeREj@Base 3.7+4565
 _ZNK6muscle4Tree20FirstDepthFirstNodeREv@Base 3.7+4565
 _ZNK6muscle4Tree20GetLeafCountUnrootedEjjPd@Base 3.7+4565
 _ZNK6muscle4Tree20GetNeighborSubscriptEjj@Base 3.7+4565
 _ZNK6muscle4Tree20LeafIndexToNodeIndexEj@Base 3.7+4565
 _ZNK6muscle4Tree5LogMeEv@Base 3.7+4565
 _ZNK6muscle4Tree6IsEdgeEjj@Base 3.7+4565
 _ZNK6muscle4Tree6NTTStrENS_17NEWICK_TOKEN_TYPEE@Base 3.7+4565
 _ZNK6muscle4Tree6ToFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle4Tree8GetTokenERNS_8TextFileEPcj@Base 3.7+4565
 _ZNK6muscle4Tree8ValidateEv@Base 3.7+4565
 _ZNK6muscle4Tree9GetLeafIdEj@Base 3.7+4565
 _ZNK6muscle5Clust11GetNodeNameEj@Base 3.7+4565
 _ZNK6muscle5Clust11VectorIndexEjj@Base 3.7+4565
 _ZNK6muscle5Clust12GetLeafCountEv@Base 3.7+4565
 _ZNK6muscle5Clust12GetLeftIndexEj@Base 3.7+4565
 _ZNK6muscle5Clust12GetMinMetricEPjS1_@Base 3.7+4565
 _ZNK6muscle5Clust13ComputeMetricEjj@Base 3.7+4565
 _ZNK6muscle5Clust13GetRightIndexEj@Base 3.7+4565
 _ZNK6muscle5Clust14GetClusterSizeEj@Base 3.7+4565
 _ZNK6muscle5Clust14GetNextClusterEj@Base 3.7+4565
 _ZNK6muscle5Clust15GetClusterCountEv@Base 3.7+4565
 _ZNK6muscle5Clust15GetFirstClusterEv@Base 3.7+4565
 _ZNK6muscle5Clust22GetMinMetricBruteForceEPjS1_@Base 3.7+4565
 _ZNK6muscle5Clust28ComputeMetricNearestNeighborEjj@Base 3.7+4565
 _ZNK6muscle5Clust28ComputeMetricNeighborJoiningEjj@Base 3.7+4565
 _ZNK6muscle5Clust5LogMeEv@Base 3.7+4565
 _ZNK6muscle5Clust6Calc_rEj@Base 3.7+4565
 _ZNK6muscle5Clust6IsLeafEj@Base 3.7+4565
 _ZNK6muscle5Clust7GetDistEjj@Base 3.7+4565
 _ZNK6muscle5Clust7GetLeafEjj@Base 3.7+4565
 _ZNK6muscle5Clust7GetNodeEj@Base 3.7+4565
 _ZNK6muscle5Clust9GetHeightEj@Base 3.7+4565
 _ZNK6muscle5Clust9GetLengthEj@Base 3.7+4565
 _ZNK6muscle5Clust9GetNodeIdEj@Base 3.7+4565
 _ZNK6muscle6PWPath11AssertEqualERKS0_@Base 3.7+4565
 _ZNK6muscle6PWPath13GetMatchCountEv@Base 3.7+4565
 _ZNK6muscle6PWPath14GetDeleteCountEv@Base 3.7+4565
 _ZNK6muscle6PWPath14GetInsertCountEv@Base 3.7+4565
 _ZNK6muscle6PWPath5EqualERKS0_@Base 3.7+4565
 _ZNK6muscle6PWPath5LogMeEv@Base 3.7+4565
 _ZNK6muscle6PWPath6ToFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle6PWPath7GetEdgeEj@Base 3.7+4565
 _ZNK6muscle6PWPath8ValidateEv@Base 3.7+4565
 _ZNK6muscle7SeqVect10GetSeqNameEj@Base 3.7+4565
 _ZNK6muscle7SeqVect10GuessAlphaEv@Base 3.7+4565
 _ZNK6muscle7SeqVect11ToFASTAFileERNS_8TextFileE@Base 3.7+4565
 _ZNK6muscle7SeqVect12GetSeqLengthEj@Base 3.7+4565
 _ZNK6muscle7SeqVect16GetSeqIdFromNameEPKc@Base 3.7+4565
 _ZNK6muscle7SeqVect5LogMeEv@Base 3.7+4565
 _ZNK6muscle7SeqVect6GetSeqEj@Base 3.7+4565
 _ZNK6muscle7SeqVect8FindNameEPKcPj@Base 3.7+4565
 _ZNK6muscle7SeqVect8GetSeqIdEj@Base 3.7+4565
 _ZNK6muscle8DiagList19NonZeroIntersectionERKNS_4DiagE@Base 3.7+4565
 _ZNK6muscle8DiagList3GetEj@Base 3.7+4565
 _ZNK6muscle8DiagList5LogMeEv@Base 3.7+4565
 _ZNK6muscle8DiagList8IsSortedEv@Base 3.7+4565
 _ZNK6muscle8DistFunc11VectorIndexEjj@Base 3.7+4565
 _ZNK6muscle8DistFunc12VectorLengthEv@Base 3.7+4565
 _ZNK6muscle8DistFunc5GetIdEj@Base 3.7+4565
 _ZNK6muscle8DistFunc5LogMeEv@Base 3.7+4565
 _ZNK6muscle8DistFunc7GetDistEjj@Base 3.7+4565
 _ZNK6muscle8DistFunc7GetNameEj@Base 3.7+4565
 _ZNK6muscle8DistFunc8GetCountEv@Base 3.7+4565
 _ZNK6muscle8EdgeList5LogMeEv@Base 3.7+4565
 _ZNK6muscle8EdgeList7GetEdgeEjPjS1_@Base 3.7+4565
 _ZNK6muscle8EdgeList8GetCountEv@Base 3.7+4565
 (optional)_ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 3.7+4565
 (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 3.7+4565
 (optional)_ZNSt6vectorIcSaIcEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPcS1_EE@Base 3.7+4565
 (arch-bits=32)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 3.7+4565
 (optional)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 3.7+4565
 _ZTIN6muscle10ClustSetDFE@Base 3.7+4565
 _ZTIN6muscle10DistCalcDFE@Base 3.7+4565
 _ZTIN6muscle11ClustSetMSAE@Base 3.7+4565
 _ZTIN6muscle11ClusterTreeE@Base 3.7+4565
 _ZTIN6muscle11DistCalcMSAE@Base 3.7+4565
 _ZTIN6muscle12DistCalcTestE@Base 3.7+4565
 _ZTIN6muscle3MSAE@Base 3.7+4565
 _ZTIN6muscle3SeqE@Base 3.7+4565
 _ZTIN6muscle4TreeE@Base 3.7+4565
 _ZTIN6muscle5ClustE@Base 3.7+4565
 _ZTIN6muscle6PWPathE@Base 3.7+4565
 _ZTIN6muscle7SeqVectE@Base 3.7+4565
 _ZTIN6muscle8ClustSetE@Base 3.7+4565
 _ZTIN6muscle8DistCalcE@Base 3.7+4565
 _ZTIN6muscle8DistFuncE@Base 3.7+4565
 _ZTIN6muscle8EdgeListE@Base 3.7+4565
 _ZTIN6muscle8TextFileE@Base 3.7+4565
 _ZTISt12_Vector_baseIPN6muscle3SeqESaIS2_EE@Base 3.7+4565
 _ZTISt12_Vector_baseIcSaIcEE@Base 3.7+4565
 _ZTISt6vectorIPN6muscle3SeqESaIS2_EE@Base 3.7+4565
 _ZTISt6vectorIcSaIcEE@Base 3.7+4565
 _ZTSN6muscle10ClustSetDFE@Base 3.7+4565
 _ZTSN6muscle10DistCalcDFE@Base 3.7+4565
 _ZTSN6muscle11ClustSetMSAE@Base 3.7+4565
 _ZTSN6muscle11ClusterTreeE@Base 3.7+4565
 _ZTSN6muscle11DistCalcMSAE@Base 3.7+4565
 _ZTSN6muscle12DistCalcTestE@Base 3.7+4565
 _ZTSN6muscle3MSAE@Base 3.7+4565
 _ZTSN6muscle3SeqE@Base 3.7+4565
 _ZTSN6muscle4TreeE@Base 3.7+4565
 _ZTSN6muscle5ClustE@Base 3.7+4565
 _ZTSN6muscle6PWPathE@Base 3.7+4565
 _ZTSN6muscle7SeqVectE@Base 3.7+4565
 _ZTSN6muscle8ClustSetE@Base 3.7+4565
 _ZTSN6muscle8DistCalcE@Base 3.7+4565
 _ZTSN6muscle8DistFuncE@Base 3.7+4565
 _ZTSN6muscle8EdgeListE@Base 3.7+4565
 _ZTSN6muscle8TextFileE@Base 3.7+4565
 _ZTSSt12_Vector_baseIPN6muscle3SeqESaIS2_EE@Base 3.7+4565
 _ZTSSt12_Vector_baseIcSaIcEE@Base 3.7+4565
 _ZTSSt6vectorIPN6muscle3SeqESaIS2_EE@Base 3.7+4565
 _ZTSSt6vectorIcSaIcEE@Base 3.7+4565
 _ZTVN6muscle10ClustSetDFE@Base 3.7+4565
 _ZTVN6muscle10DistCalcDFE@Base 3.7+4565
 _ZTVN6muscle11ClustSetMSAE@Base 3.7+4565
 _ZTVN6muscle11ClusterTreeE@Base 3.7+4565
 _ZTVN6muscle11DistCalcMSAE@Base 3.7+4565
 _ZTVN6muscle12DistCalcTestE@Base 3.7+4565
 _ZTVN6muscle3MSAE@Base 3.7+4565
 _ZTVN6muscle3SeqE@Base 3.7+4565
 _ZTVN6muscle4TreeE@Base 3.7+4565
 _ZTVN6muscle5ClustE@Base 3.7+4565
 _ZTVN6muscle6PWPathE@Base 3.7+4565
 _ZTVN6muscle7SeqVectE@Base 3.7+4565
 _ZTVN6muscle8DistFuncE@Base 3.7+4565
 _ZTVN6muscle8EdgeListE@Base 3.7+4565
 _ZTVN6muscle8TextFileE@Base 3.7+4565
 _ZZNK6muscle12DistCalcTest13CalcDistRangeEjPfE8TestDist@Base 3.7+4565