Commit 4dd164fd6d3b86dda105b75bfd93577c2e0bb82b - prokka

Add docker/singularity instructions Torsten Seemann 4 years ago

1 changed file(s) with 19 addition(s) and 5 deletion(s). Raw diff Collapse all Expand all

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README.md less more

13	13
14	14	## Installation
15	15
	16	### Bioconda
	17	If you use [Conda](https://conda.io/docs/install/quick.html)
	18	you can use the [Bioconda channel](https://bioconda.github.io/):
	19	```
	20	conda install -c conda-forge -c bioconda -c defaults prokka
	21	```
	22
16	23	### Brew
17	24	If you are using the [MacOS Brew](http://brew.sh/)
18	25	or [LinuxBrew](http://brew.sh/linuxbrew/) packaging system:

20	27	brew install brewsci/bio/prokka
21	28	```
22	29
23		### Bioconda
24		If you use [Conda](https://conda.io/docs/install/quick.html)
25		you can use the [Bioconda channel](https://bioconda.github.io/):
26		```
27		conda install -c conda-forge -c bioconda -c defaults prokka
	30	### Docker
	31	Maintained by https://hub.docker.com/u/staphb
	32	```
	33
	34	docker pull staphb/prokka:latest
	35	docker run staphb/prokka:latest prokka -h
	36	```
	37
	38	### Singularity
	39	```
	40	singularity build prokka.sif docker://staphb/prokka:latest
	41	singularity exec prokka.sif prokka -h
28	42	```
29	43
30	44	### Ubuntu/Debian/Mint