New Upstream Snapshot - mcaller
Ready changes
Summary
Merged new upstream version: 1.0.3+git20210625.b415090+ds (was: 1.0.3+git20210624.b415090).
Resulting package
Built on 2022-08-26T00:55 (took 13m3s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots mcaller
Lintian Result
Diff
diff --git a/debian/changelog b/debian/changelog
index c7ba804..5e6a8d6 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+mcaller (1.0.3+git20210625.b415090+ds-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Fri, 26 Aug 2022 00:48:41 -0000
+
mcaller (1.0.3+git20210624.b415090-3) unstable; urgency=medium
* Team upload.
diff --git a/debian/patches/prefixes.patch b/debian/patches/prefixes.patch
index 9cfdb17..b3aebb1 100644
--- a/debian/patches/prefixes.patch
+++ b/debian/patches/prefixes.patch
@@ -6,6 +6,8 @@ Forwarded: https://github.com/al-mcintyre/mCaller/issues/34#issuecomment-1107786
Last-Update: 2022-04-24
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+Index: mcaller/r94_model_NN_6_m6A.pkl
+===================================================================
--- mcaller.orig/r94_model_NN_6_m6A.pkl
+++ mcaller/r94_model_NN_6_m6A.pkl
@@ -1,7 +1,7 @@
@@ -17,7 +19,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
MLPClassifier
p2
c__builtin__
-@@ -68,7 +68,7 @@
+@@ -68,7 +68,7 @@ S'A\x00\x00m6A'
tbsS'_label_binarizer'
p20
g1
@@ -26,16 +28,18 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
LabelBinarizer
p21
g3
-@@ -445,4 +445,4 @@
+@@ -445,4 +445,4 @@ I00
S'p\xe7\xbe\xba\x87\xceM?'
tbasg93
F0.001
-sbsb.
\ No newline at end of file
+sbsb.
+Index: mcaller/r95_twobase_model_NN_6_m6A.pkl
+===================================================================
--- mcaller.orig/r95_twobase_model_NN_6_m6A.pkl
+++ mcaller/r95_twobase_model_NN_6_m6A.pkl
-@@ -4,7 +4,7 @@
+@@ -4,7 +4,7 @@ p2
ccopy_reg
_reconstructor
p3
@@ -44,7 +48,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
MLPClassifier
p4
c__builtin__
-@@ -71,7 +71,7 @@
+@@ -71,7 +71,7 @@ S'A\x00\x00m6A'
tbsS'_label_binarizer'
p22
g3
@@ -53,7 +57,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
LabelBinarizer
p23
g5
-@@ -1013,4 +1013,4 @@
+@@ -1013,4 +1013,4 @@ I00
S'Id\x1f\x8eJ\x03\x86\xbf'
tbasg156
F0.001
diff --git a/debian/patches/shebang.patch b/debian/patches/shebang.patch
index 322ac51..8664378 100644
--- a/debian/patches/shebang.patch
+++ b/debian/patches/shebang.patch
@@ -1,27 +1,27 @@
-Index: mcaller-0.0/compare_genomes.py
+Index: mcaller/compare_genomes.py
===================================================================
---- mcaller-0.0.orig/compare_genomes.py
-+++ mcaller-0.0/compare_genomes.py
+--- mcaller.orig/compare_genomes.py
++++ mcaller/compare_genomes.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
import sys
import numpy as np
import os
-Index: mcaller-0.0/mCaller.py
+Index: mcaller/mCaller.py
===================================================================
---- mcaller-0.0.orig/mCaller.py
-+++ mcaller-0.0/mCaller.py
+--- mcaller.orig/mCaller.py
++++ mcaller/mCaller.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
#A program to classify bases as methylated or unmethylated based on long-range signals using the output from nanopolish
#Alexa McIntyre, 2016-2018
-Index: mcaller-0.0/make_bed.py
+Index: mcaller/make_bed.py
===================================================================
---- mcaller-0.0.orig/make_bed.py
-+++ mcaller-0.0/make_bed.py
+--- mcaller.orig/make_bed.py
++++ mcaller/make_bed.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
Debdiff
File lists identical (after any substitutions)
No differences were encountered in the control files