Source: barrnap
Priority: optional
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <sascha@steinbiss.name>
Build-Depends: debhelper (>= 9.0.0), hmmer (>= 3.1), lua5.1
Standards-Version: 3.9.6
Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/barrnap/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/barrnap/trunk/

Package: barrnap
Architecture: all
Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}, hmmer (>= 3.1)
Suggests: barrnap-silva-hmms
Description: rapid ribosomal RNA prediction
 Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of
 ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea
 (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
 .
 It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the
 NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
 Multithreading is supported and one can expect roughly linear speed-ups
 with more CPUs.

Package: barrnap-silva-hmms
Architecture: any
Section: non-free/science
Depends: ${misc:Depends}, barrnap
Description: non-free pHMMs for barrnap
 Profile Hidden Markov models (pHMMs) for use with Barrnap (BAsic Rapid
 Ribosomal RNA Predictor), which are only free to use for academic users.
 In particular, these are the 28S (euk) and 23S (arc, bac) rRNAs.