/*
* Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
*
* This file is part of Bowtie 2.
*
* Bowtie 2 is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Bowtie 2 is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef FORMATS_H_
#define FORMATS_H_
#include <iostream>
/**
* File-format constants and names
*/
enum file_format {
FASTA = 1,
FASTA_CONT,
FASTQ,
TAB_MATE5,
TAB_MATE6,
RAW,
CMDLINE,
QSEQ,
SRA_FASTA,
SRA_FASTQ
};
static const std::string file_format_names[] = {
"Invalid!",
"FASTA",
"FASTA sampling",
"FASTQ",
"Tabbed mated",
"Raw",
"Command line",
"Chain file",
"Random",
"Qseq",
"SRA_FASTA",
"SRA_FASTQ"
};
#endif /*FORMATS_H_*/