Lintian Fixes - gatk-native-bindings

Ready changes

Summary

Lintian Result

Diff

diff --git a/debian/changelog b/debian/changelog
index ee1d4be..8498ce9 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,19 @@
+gatk-native-bindings (1.0.0-3) UNRELEASED; urgency=medium
+
+  * Trim trailing whitespace.
+  * Use secure copyright file specification URI.
+  * Bump debhelper from old 11 to 13.
+  * Set debhelper-compat version in Build-Depends.
+  * Set upstream metadata fields: Bug-Database, Bug-Submit.
+  * Update standards version to 4.1.5, no changes needed.
+  * Remove field Section on binary package libgatk-native-bindings-java that
+    duplicates source.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Wed, 20 Apr 2022 03:38:19 -0000
+
 gatk-native-bindings (1.0.0-2) unstable; urgency=medium
 
-  * Upload to unstable 
+  * Upload to unstable
   * Enable unit tests after jcommander fix
 
  -- Olivier Sallou <osallou@debian.org>  Mon, 06 Aug 2018 07:42:21 +0000
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index b4de394..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-11
diff --git a/debian/control b/debian/control
index cb72904..224439c 100644
--- a/debian/control
+++ b/debian/control
@@ -4,12 +4,12 @@ Uploaders: Olivier Sallou <osallou@debian.org>
 Section: java
 Priority: optional
 Build-Depends: default-jdk (>= 2:1.9~),
-               debhelper (>= 11~),
+               debhelper-compat (= 13),
                javahelper,
                gradle-debian-helper,
                maven-repo-helper,
                default-jdk-doc,
-Standards-Version: 4.1.4
+Standards-Version: 4.1.5
 Vcs-Browser: https://salsa.debian.org/java-team/gatk-native-bindings
 Vcs-Git: https://salsa.debian.org/java-team/gatk-native-bindings.git
 Homepage: http://broadinstitute.github.io/broadinstitute/gatk-native-bindings
@@ -17,10 +17,8 @@ Homepage: http://broadinstitute.github.io/broadinstitute/gatk-native-bindings
 
 Package: libgatk-native-bindings-java
 Architecture: all
-Section: java
 Depends: ${misc:Depends},
          ${maven:Depends}
 Recommends: ${java:Recommends},
 Description: library for gatk and picard-tools
  Utilitary library for gatk and picard-tools
-
diff --git a/debian/copyright b/debian/copyright
index 47dc49d..732085b 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Source: https://github.com/broadinstitute/gatk-native-bindings/releases
 
 Files: *
diff --git a/debian/rules b/debian/rules
index aa832d3..04af945 100755
--- a/debian/rules
+++ b/debian/rules
@@ -7,14 +7,14 @@ export ANT_HOME=/usr/share/ant
 export JAVA_HOME=$(readlink -f /usr/bin/javac | sed "s:/bin/javac::")
 
 %:
-	dh  $@ --buildsystem=gradle --with javahelper,jh_maven_repo_helper
+	dh $@  --buildsystem=gradle --with javahelper,jh_maven_repo_helper
 
 override_dh_auto_build:
-	dh_auto_build -- jar 
+	dh_auto_build -- jar
 
 override_dh_auto_test:
 	# Tests do not work with locales with a different decimal separator
-	# (for example ',') 
+	# (for example ',')
 	env LC_ALL=C \
 	dh_auto_build -- test
 
@@ -36,4 +36,3 @@ override_dh_gencontrol:
 	| sed -e 's/[[:space:]]\+/ /g;s/,$$/\n/' \
 	>> debian/bd.substvars
 	dh_gencontrol -O--buildsystem=gradle -- -Tdebian/bd.substvars
-
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..a7debb0
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,3 @@
+---
+Bug-Database: https://github.com/broadinstitute/gatk-native-bindings/issues
+Bug-Submit: https://github.com/broadinstitute/gatk-native-bindings/issues/new

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