Lintian Fixes - python-pymzml
Ready changes
Summary
- Trim trailing whitespace. ( trailing-whitespace )
- Use secure copyright file specification URI. ( insecure-copyright-format-uri )
- Set debhelper-compat version in Build-Depends. ( uses-debhelper-compat-file )
- Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. ( upstream-metadata-missing-bug-tracking , upstream-metadata-missing-repository )
- Add debian/watch file, using pypi. ( debian-watch-file-is-missing )
- Update standards version to 4.6.2, no changes needed. ( out-of-date-standards-version )
Failed fixers:
See the worker log for details.
Diff
diff --git a/debian/changelog b/debian/changelog
index 6cdd503..8164359 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -21,7 +21,7 @@ python-pymzml (2.4.7-3) unstable; urgency=low
python-pymzml (2.4.7-2) unstable; urgency=low
- * Fix documentation build problem with svg files around
+ * Fix documentation build problem with svg files around
(Closes: #962928). This build failure only shows when using sbuild and not
gbp buildpackage. Apparently, it only shows when the doc-building process
fails to access the network.
@@ -62,7 +62,7 @@ python-pymzml (20170926-1) unstable; urgency=low
* Add dependency on python-sphinx-rtd-theme since that package is no
longer a hard dependency for python-sphinx.
- * Abandon old patch about removing the shebang line from py files since
+ * Abandon old patch about removing the shebang line from py files since
upstream implemented my suggestion.
-- Filippo Rusconi <lopippo@debian.org> Tue, 26 Sep 2017 09:54:13 +0200
@@ -118,11 +118,11 @@ python-pymzml (0.7.6-dfsg-1) unstable; urgency=medium
python-mzml (0.7.4-dfsg-3) unstable; urgency=medium
* mv upstream upstream/metadata;
-
+
* d/control: Canonicalize the VCS uris;
-
+
* d/control: set Standards-Version: 3.9.5
-
+
-- Filippo Rusconi <lopippo@debian.org> Wed, 20 Aug 2014 14:18:01 +0200
python-mzml (0.7.4-dfsg-2) unstable; urgency=low
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index 74e3d33..0000000
--- a/debian/compat
+++ /dev/null
@@ -1,2 +0,0 @@
-13
-
diff --git a/debian/control b/debian/control
index f823442..0db226d 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Section: python
Priority: optional
-Build-Depends: debhelper (>= 13),
+Build-Depends: debhelper-compat (= 13),
dpkg-dev (>= 1.20),
dh-python,
python3,
@@ -20,7 +20,7 @@ Build-Depends-Indep: python3-sphinx-rtd-theme (>= 0.4.3),
tex-gyre,
fonts-urw-base35,
imagemagick-6-common,
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Homepage: https://github.com/pymzml/pymzML
Vcs-Browser: https://salsa.debian.org/debichem-team/python-pymzml
Vcs-Git: https://salsa.debian.org/debichem-team/python-pymzml.git
@@ -36,9 +36,9 @@ Depends: ${misc:Depends},
Suggests: python-pymzml-doc
Description: mzML mass spectrometric data parsing (Python 3.x)
python-pymzml (pymzML) is an extension to Python that offers:
- - easy access to mass spectrometry (MS) data that allows
+ - easy access to mass spectrometry (MS) data that allows
the rapid development of tools;
- - a very fast parser for mzML data, the standard in
+ - a very fast parser for mzML data, the standard in
mass spectrometry data format;
- a set of functions to compare or handle spectra.
.
@@ -55,12 +55,11 @@ Depends: libjs-jquery,
${misc:Depends}
Description: mzML mass spectrometric data parsing - documentation
python-pymzml (pymzML) is an extension to Python that offers:
- - easy access to mass spectrometry (MS) data that allows
+ - easy access to mass spectrometry (MS) data that allows
the rapid development of tools;
- - a very fast parser for mzML data, the standard in
+ - a very fast parser for mzML data, the standard in
mass spectrometry data format;
- a set of functions to compare or handle spectra.
.
This package contains the documentation in PDF and HTML format,
along with the text sources (processed with sphinx).
-
diff --git a/debian/copyright b/debian/copyright
index 54debb5..131b13e 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pymzML
Upstream-Contact: Dr. Christian Fufezan (christian@fufezan.net)
Source: http://pymzml.github.com/dist/pymzml.tar.bz2
diff --git a/debian/rules b/debian/rules
index aba7a8a..0dde467 100755
--- a/debian/rules
+++ b/debian/rules
@@ -65,4 +65,3 @@ override_dh_auto_build-indep: html_doc pdf_doc
cp -v docs/build/latex/pymzML.pdf $(DOCDIR) && \
rm -rf docs && \
mv docs-bkp docs
-
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 3147589..93b8898 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/pymzml/pymzML/issues
+Bug-Submit: https://github.com/pymzml/pymzML/issues/new
Reference:
Author: T. Bald and J. Barth and A. Niehues and M. Specht and M. Hippler and C. Fufezan
Title: pymzML - Python module for high throughput bioinformatics on mass spectrometry data
@@ -12,3 +14,4 @@ Reference:
eprint: http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts066.full.pdf
Repository : https://github.com/pymzml/pymzML
+Repository-Browse: https://github.com/pymzml/pymzML
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..35020d9
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=4
+https://pypi.debian.net/pymzml/pymzml-(.+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))
Debdiff
File lists identical (after any substitutions)
No differences were encountered between the control files of package python-pymzml-doc
No differences were encountered between the control files of package python3-pymzml