Package list python-pauvre / f65d08dd-33f7-4441-80b9-2a33edc8df47/main scripts / test.sh
f65d08dd-33f7-4441-80b9-2a33edc8df47/main

Tree @f65d08dd-33f7-4441-80b9-2a33edc8df47/main (Download .tar.gz)

test.sh @f65d08dd-33f7-4441-80b9-2a33edc8df47/mainraw · history · blame

set -ev

git clone https://github.com/wdecoster/nanotest.git

pauvre -h

pauvre marginplot -h
pauvre marginplot -f nanotest/reads.fastq.gz
pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000
pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg

pauvre stats -h
pauvre stats -f nanotest/reads.fastq.gz
pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12