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- addintrons.gff3
- addintrons.out
- additional_attribute.gff3
- all_node_types.gff3
- Arabidopsis-C99826.embl
- Arabidopsis-C99826.fna
- Arabidopsis-C99826.gbk
- at-C99887-fwd.fna
- at-C99887-rev.fna
- at-C99930.fna
- at100K1
- at1MB
- Atinsert.embl
- Atinsert.fna
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- Atinsert_seqrange_13-17_rev.fna
- Atinsert_seqrange_3-7.fna
- Atinsert_single_3.fna
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- attribute_after_dot.gff3
- attribute_w_multiple_equals.gff3
- bar.fas
- bigfonts.style
- blank_attributes.gff3
- BLOSUM62
- blosum62.c
- BLOSUM62.gth
- BLOSUM62.out
- broken_hmmer.hmm
- cds_check_fail_1.gff3
- cds_check_fail_2.gff3
- cds_check_fail_3.gff3
- cds_check_fail_4.gff3
- cds_check_succ_1.gff3
- cds_check_succ_10.gff3
- cds_check_succ_11.gff3
- cds_check_succ_12.gff3
- cds_check_succ_2.gff3
- cds_check_succ_3.gff3
- cds_check_succ_4.gff3
- cds_check_succ_5.gff3
- cds_check_succ_6.gff3
- cds_check_succ_7.gff3
- cds_check_succ_8.gff3
- cds_check_succ_9.gff3
- cds_feature_with_multiple_parents.gff3
- cds_feature_with_multiple_parents_tidied.gff3
- cds_with_multiple_parents_1.gff3
- cds_with_multiple_parents_1_tidied.gff3
- cds_with_multiple_parents_2.gff3
- cds_with_multiple_parents_2_tidied.gff3
- Copysorttest.embl
- Copysorttest.fna
- Copysorttest.gbk
- corrupt.fas
- corrupt.gff3
- corrupt_gff3_header.txt
- corrupt_large.gff3
- corrupt_target_attribute.gff3
- corruptpatternfile.fna
- csa_example_consensus_spliced_alignments.gff3
- csa_example_spliced_alignments.gff3
- csr_testcase.fastq
- csr_testcase_r0.fastq
- csr_testcase_r10.fastq
- csr_testcase_r23.fastq
- csr_testcase_r96.fastq
- custom_streams_ref.txt
- cycle_simple.gff3
- dbxref.gff3
- dbxref_invalid.gff3
- dbxref_invalid2.gff3
- description_test.fastq
- description_test2.fastq
- dna_hmmer.hmm
- double_free.gff3
- Duplicate.embl
- Duplicate.fna
- Duplicate.gbk
- Duplicate.shreddered
- duplicate.XRF_abbr
- duplicate_attribute.gff3
- duplicate_attribute_fixed.gff3
- dust.fna
- dust.link5.out
- dust.out
- dust.threshold3.out
- dust.window32.out
- dynbuf.gff3
- Ecoli-section1.fna
- Ecoli-section2.fna
- ecolicmp-neg.of
- ecolicmp-se.of
- ecolicmp.of
- ecolicmp250.of
- eden.gff3
- eden.linesorted.gff3
- eden_only_annotation.gff3
- embl_test1.embl
- embl_test2.embl
- embl_test3.embl
- embl_test4.embl
- embl_test5.embl
- embl_test5.fas
- embl_test6.embl
- empty.gff3
- empty_attribute.gff3
- empty_attribute_name.gff3
- empty_attribute_value.gff3
- empty_file
- empty_id_attribute.gff3
- empty_other_attribute.gff3
- empty_parent_attribute.gff3
- empty_seq.fas
- encode_known_genes_Mar07.gff3
- encode_known_genes_Mar07.seqids
- example_1.bam
- example_1.fa
- example_1.fa.fai
- example_1.sam.extract
- example_1.sam.gz
- example_1.sorted.bam
- example_1.sorted.bam.bai
- fail_arrow_width.style
- fail_background_color.style
- fail_block_caption_font_size.style
- fail_block_caption_space.style
- fail_collapse.style
- fail_default_stroke_color.style
- fail_fill.style
- fail_group_by_parent.style
- fail_max_capt_show_width.style
- fail_max_num_lines.style
- fail_max_show_width.style
- fail_min_len_block.style
- fail_ruler_text.style
- fail_rulerfontsize.style
- fail_rulerspace.style
- fail_show_bar_height.style
- fail_show_block_captions.style
- fail_show_grid.style
- fail_show_margins.style
- fail_show_track_captions.style
- fail_split.style
- fail_stroke.style
- fail_stroke_width.style
- fail_style.style
- fail_track_caption_font_size.style
- fail_track_caption_space.style
- fail_track_title_color.style
- fail_track_vspace.style
- fail_unit.style
- fail_vspace.style
- fasta_seq.fas
- fasta_seq.gff3
- fastq_long.fastq
- fastq_problem.fasta
- fastq_problem.fastq.gz
- fastq_problem2.fasta
- fastq_problem2.fastq.gz
- fib25.fas.gz
- filter_luafilter_filtered_LTR.gff3
- filter_luafilter_filtered_orf_frame.gff3
- filter_luafilter_filtered_orf_pos.gff3
- filter_luafilter_filtered_orfs.gff3
- filter_luafilter_test.gff3
- filter_luafilter_test_no_frame_attribute.gff3
- filter_nh_file01.gff3
- filter_nh_file02.gff3
- filter_nh_file03.gff3
- filter_nh_file04.gff3
- filter_targetbest_complex_test.gff3
- filter_targetbest_complex_test.out
- filter_targetbest_multiple_test.gff3
- filter_targetbest_simple_test.gff3
- filter_targetbest_simple_test.out
- foo.32.des
- foo.32.esq
- foo.32.info_map
- foo.32.info_nomap
- foo.32.sds
- foo.32.ver0.al1
- foo.32.ver0.esq
- foo.64.des
- foo.64.esq
- foo.64.info_map
- foo.64.info_nomap
- foo.64.sds
- foo.64.ver0.al1
- foo.64.ver0.esq
- foo.fas
- foo_width4.fas
- foobar.fas
- foofoo.fas
- foofoofoo.fas
- foorcfoo.fas
- foorcfoofoo.fas
- frompos.fas
- gap_fail1.gff3
- gap_fail2.gff3
- gap_fail3.gff3
- gap_fail4.gff3
- gap_fail5.gff3
- gap_fail6.gff3
- gap_fail7.gff3
- genbank_test.gbk
- genbank_test1.gbk
- genbank_test2.fas
- genbank_test2.gbk
- genbank_test3.gbk
- genbank_test4.gbk
- genbank_test5.gbk
- genbank_test6.gbk
- genbank_test7.gbk
- genbank_test8.gbk
- genome_stream_stdin.gff3
- gff3_file_1_short.txt
- gff3_file_1_short_sorted.txt
- gff3_numeric_a.gff
- gff3_numeric_mixed.gff3
- gff3_numeric_mixed.out
- gff3_numeric_only.gff3
- gff3_numeric_only.out
- gmap2gff3_prob.gmap
- gmap2gff3_prob.out
- graphics_curve_test_coords.txt
- graphics_test.out
- gt.supp
- gt_bioseq_fail_1.fas
- gt_bioseq_fail_2.fas
- gt_bioseq_fail_3.fas
- gt_bioseq_fail_4.fas
- gt_bioseq_fail_5.fas
- gt_bioseq_fail_6.fas
- gt_bioseq_fail_7.fas
- gt_bioseq_seqlengthdistri.out
- gt_bioseq_succ_1.fas
- gt_bioseq_succ_2.fas
- gt_bioseq_succ_3.fas
- gt_bioseq_succ_3.gc
- gt_bioseq_succ_3.out1
- gt_bioseq_succ_3.out2
- gt_bioseq_succ_3.out3
- gt_cds_descrange_multi.fas
- gt_cds_descrange_multi.in
- gt_cds_descrange_multi.out
- gt_cds_descrange_multi_fail_1.fas
- gt_cds_descrange_multi_fail_2.fas
- gt_cds_descrange_wrong_id.fas
- gt_cds_descrange_wrong_range.fas
- gt_cds_nostartcodon_nofinalstopcodon.in
- gt_cds_nostartcodon_nofinalstopcodon.out
- gt_cds_test_1.fas
- gt_cds_test_1.in
- gt_cds_test_1.out
- gt_cds_test_10.fas
- gt_cds_test_10.in
- gt_cds_test_10.out
- gt_cds_test_11.fas
- gt_cds_test_11.in
- gt_cds_test_11.out
- gt_cds_test_12.fas
- gt_cds_test_12.in
- gt_cds_test_12.out
- gt_cds_test_13.fas
- gt_cds_test_13.in
- gt_cds_test_13.out
- gt_cds_test_14.fas
- gt_cds_test_14.in
- gt_cds_test_14.out
- gt_cds_test_2.fas
- gt_cds_test_2.in
- gt_cds_test_2.out
- gt_cds_test_3.fas
- gt_cds_test_3.in
- gt_cds_test_3.out
- gt_cds_test_4.fas
- gt_cds_test_4.in
- gt_cds_test_4.out
- gt_cds_test_5.fas
- gt_cds_test_5.in
- gt_cds_test_5.out
- gt_cds_test_6.fas
- gt_cds_test_6.in
- gt_cds_test_6.out
- gt_cds_test_7.fas
- gt_cds_test_7.in
- gt_cds_test_7.out
- gt_cds_test_8.fas
- gt_cds_test_8.in
- gt_cds_test_8.out
- gt_cds_test_9.fas
- gt_cds_test_9.in
- gt_cds_test_9.out
- gt_cds_test_descrange.fas
- gt_cds_test_descrange.in
- gt_cds_test_descrange.out
- gt_chseqids_test_1.chseqids
- gt_chseqids_test_1.gff3
- gt_chseqids_test_1.out
- gt_chseqids_test_2.chseqids
- gt_chseqids_test_2.gff3
- gt_chseqids_test_2.out
- gt_chseqids_test_3.chseqids
- gt_chseqids_test_3.gff3
- gt_chseqids_test_4.chseqids
- gt_chseqids_test_4.gff3
- gt_chseqids_test_4.out
- gt_chseqids_test_5.chseqids
- gt_chseqids_test_5.gff3
- gt_chseqids_test_5.out
- gt_chseqids_test_5.sorted_out
- gt_chseqids_test_6.chseqids
- gt_chseqids_test_6.gff3
- gt_chseqids_test_6.out
- gt_csa_prob_1.debug
- gt_csa_prob_1.in
- gt_csa_prob_1.out
- gt_csa_prob_2.debug
- gt_csa_prob_2.in
- gt_csa_prob_2.out
- gt_csa_prob_3.debug
- gt_csa_prob_3.in
- gt_csa_prob_3.out
- gt_csa_prob_4.debug
- gt_csa_prob_4.in
- gt_csa_prob_4.out
- gt_csa_prob_5.in
- gt_csa_prob_5.out
- gt_csa_prob_6.in
- gt_csa_prob_6.out
- gt_csa_test_1.in
- gt_encseq_col_test1.fasta
- gt_encseq_eqlen_last_empty.fas
- gt_eval_ltr_prob_1.out
- gt_eval_ltr_prob_1.prediction
- gt_eval_ltr_prob_1.reality
- gt_eval_ltr_test_1.in
- gt_eval_ltr_test_1.out
- gt_eval_ltr_test_2.out
- gt_eval_ltr_test_2.prediction
- gt_eval_ltr_test_2.reality
- gt_eval_ltr_test_3.out
- gt_eval_ltr_test_3.prediction
- gt_eval_ltr_test_3.reality
- gt_eval_ltr_test_4.out
- gt_eval_ltr_test_4.prediction
- gt_eval_ltr_test_4.reality
- gt_eval_ltr_test_5.out
- gt_eval_ltr_test_5.prediction
- gt_eval_ltr_test_5.reality
- gt_eval_ltr_test_6.out
- gt_eval_ltr_test_6.prediction
- gt_eval_ltr_test_6.reality
- gt_eval_ltr_test_7.out
- gt_eval_ltr_test_7.prediction
- gt_eval_ltr_test_7.reality
- gt_eval_ltr_test_8.out
- gt_eval_ltr_test_8.prediction
- gt_eval_ltr_test_8.reality
- gt_eval_ltr_test_9.out
- gt_eval_ltr_test_9.prediction
- gt_eval_ltr_test_9.reality
- gt_eval_prob_1.out
- gt_eval_prob_1.out_swapped
- gt_eval_prob_1.prediction
- gt_eval_prob_1.reality
- gt_eval_test_1.in
- gt_eval_test_1.out
- gt_eval_test_10.in
- gt_eval_test_10.out
- gt_eval_test_2.nuc
- gt_eval_test_2.out
- gt_eval_test_2.prediction
- gt_eval_test_2.reality
- gt_eval_test_3.nuc
- gt_eval_test_3.out
- gt_eval_test_3.prediction
- gt_eval_test_3.reality
- gt_eval_test_4.nuc
- gt_eval_test_4.out
- gt_eval_test_4.prediction
- gt_eval_test_4.reality
- gt_eval_test_5.nuc
- gt_eval_test_5.out
- gt_eval_test_5.prediction
- gt_eval_test_5.reality
- gt_eval_test_6.nuc
- gt_eval_test_6.out
- gt_eval_test_6.prediction
- gt_eval_test_6.reality
- gt_eval_test_7.nuc
- gt_eval_test_7.out
- gt_eval_test_7.prediction
- gt_eval_test_7.reality
- gt_eval_test_8.nuc
- gt_eval_test_8.out
- gt_eval_test_8.prediction
- gt_eval_test_8.reality
- gt_eval_test_9.in
- gt_eval_test_9.out
- gt_evalviz_test.out
- gt_evalviz_test.prediction
- gt_evalviz_test.reality
- gt_extractfeat_mappings.fas
- gt_extractfeat_mappings.gff3
- gt_extractfeat_mappings.md5.gff3
- gt_extractfeat_mappings_md5.fas
- gt_extractfeat_mappings_ref.fas
- gt_extractfeat_mappings_ref.md5.fas
- gt_extractfeat_mappings_sep1.fas
- gt_extractfeat_mappings_sep2.fas
- gt_extractfeat_mappings_seprm.lua
- gt_extractfeat_mappings_seprm_bar.fas
- gt_extractfeat_mappings_seprm_baz.fas
- gt_extractfeat_mappings_seprm_foo.fas
- gt_extractfeat_mappings_seprm_quux.fas
- gt_extractfeat_matchdescstart_1.fas
- gt_extractfeat_matchdescstart_1.gff3
- gt_extractfeat_matchdescstart_1.out
- gt_extractfeat_matchdescstart_2.fas
- gt_extractfeat_phase.fas
- gt_extractfeat_phase.gff3
- gt_extractfeat_phase.out
- gt_extractfeat_phase_fix.gff3
- gt_extractfeat_phase_fix.out
- gt_extractfeat_retainids.fas
- gt_extractfeat_retainids.gff3
- gt_extractfeat_retainids_join.fas
- gt_extractfeat_seqid.fas
- gt_extractfeat_seqid_target.fas
- gt_extractfeat_seqid_target.gff3
- gt_extractfeat_succ_1.fas
- gt_extractfeat_succ_1.fas.gz
- gt_extractfeat_succ_1.gff3
- gt_extractfeat_succ_1.out
- gt_extractfeat_succ_2.fas
- gt_extractfeat_succ_2.gff3
- gt_extractfeat_succ_2.out1
- gt_extractfeat_succ_2.out2
- gt_extractfeat_succ_2.out3
- gt_extractfeat_succ_3.fas
- gt_extractfeat_succ_3.gff3
- gt_extractfeat_succ_3.out
- gt_extractfeat_target.fas
- gt_fingerprint_extract.out
- gt_gff3_addintrons_overlapping_exons.gff3
- gt_gff3_addintrons_overlapping_exons_with_introns.gff3
- gt_gff3_fail_1.gff3
- gt_gff3_illegal_feature_start.gff3
- gt_gff3_illegal_region_start.gff3
- gt_gff3_linesort.in.gff3
- gt_gff3_linesort.out.gff3
- gt_gff3_linesort2.in.gff3
- gt_gff3_linesort2.out.gff3
- gt_gff3_offset_test.gff3
- gt_gff3_offset_test.out-1
- gt_gff3_offset_test.out-999
- gt_gff3_offset_test.out1000
- gt_gff3_offsetfile_test.gff3
- gt_gff3_offsetfile_test.offsetfile
- gt_gff3_offsetfile_test.out
- gt_gff3_phases1.gff3
- gt_gff3_phases1.out
- gt_gff3_phases2.gff3
- gt_gff3_phases3.gff3
- gt_gff3_phases3.out
- gt_gff3_phases4.gff3
- gt_gff3_phases5.gff3
- gt_gff3_phases6.gff3
- gt_gff3_phases7.gff3
- gt_gff3_prob_1.gff3
- gt_gff3_prob_10.in
- gt_gff3_prob_10.out
- gt_gff3_prob_11.in
- gt_gff3_prob_11.out
- gt_gff3_prob_12.gff3
- gt_gff3_prob_13.gff3
- gt_gff3_prob_2.in
- gt_gff3_prob_2.out
- gt_gff3_prob_3.gff3
- gt_gff3_prob_4.gff3
- gt_gff3_prob_5.in
- gt_gff3_prob_5.out
- gt_gff3_prob_6.in
- gt_gff3_prob_7.in
- gt_gff3_prob_7.sorted
- gt_gff3_prob_7.unsorted
- gt_gff3_prob_8.in
- gt_gff3_prob_8.out
- gt_gff3_prob_9.in
- gt_gff3_prob_9.out
- gt_gff3_range_check.gff3
- gt_gff3_range_check2.gff3
- gt_gff3_range_check3.gff3
- gt_gff3_test_1.in
- gt_gff3_test_1.out
- gt_gff3_test_10.gff3
- gt_gff3_test_11.gff3
- gt_gff3_test_12.gff3
- gt_gff3_test_13.gff3
- gt_gff3_test_14.gff3
- gt_gff3_test_15.gff3
- gt_gff3_test_15.out
- gt_gff3_test_16.gff3
- gt_gff3_test_17.gff3
- gt_gff3_test_18.gff3
- gt_gff3_test_19.gff3
- gt_gff3_test_2.gff3
- gt_gff3_test_20.gff3
- gt_gff3_test_21.gff3
- gt_gff3_test_22.gff3
- gt_gff3_test_23.gff3
- gt_gff3_test_24.gff3
- gt_gff3_test_25.gff3
- gt_gff3_test_25.out
- gt_gff3_test_26.gff3
- gt_gff3_test_27.gff3
- gt_gff3_test_3.gff3
- gt_gff3_test_4.gff3
- gt_gff3_test_5.gff3
- gt_gff3_test_6.gff3
- gt_gff3_test_7.gff3
- gt_gff3_test_8.gff3
- gt_gff3_test_9.gff3
- gt_gff3_undefined_range.gff3
- gt_gff3_undefined_range_parent.gff3
- gt_gff3_undefined_range_tidy.gff3
- gt_gff3_whitespace_problem.gff3
- gt_gtf_to_gff3_test.gff3
- gt_gtf_to_gff3_test.gtf
- gt_gtf_to_gff3_test_fail_no_flank.gtf
- gt_gtf_to_gff3_test_inconsistent_strand1.gtf
- gt_gtf_to_gff3_test_inconsistent_strand2.gtf
- gt_gtf_to_gff3_test_stop_codon_in_cds.gff3
- gt_gtf_to_gff3_test_stop_codon_in_cds.gtf
- gt_gtf_to_gff3_test_stop_codon_in_cds2.gff3
- gt_gtf_to_gff3_test_stop_codon_in_cds2.gtf
- gt_linspace_align_affine_test_1.fas
- gt_linspace_align_affine_test_2.fas
- gt_linspace_align_affine_test_3.fas
- gt_linspace_align_global_affine_special_cases.out
- gt_linspace_align_global_affine_test_1.out
- gt_linspace_align_global_affine_test_2.out
- gt_linspace_align_global_linear_special_cases.out
- gt_linspace_align_global_test_1.out
- gt_linspace_align_global_test_2.out
- gt_linspace_align_local_affine_special_cases.out
- gt_linspace_align_local_affine_test_1.out
- gt_linspace_align_local_linear_special_cases.out
- gt_linspace_align_local_test_1.out
- gt_linspace_align_local_test_2.out
- gt_linspace_align_local_test_3.out
- gt_linspace_align_special_cases_test_1.fas
- gt_linspace_align_special_cases_test_2.fas
- gt_linspace_align_test_1.fas
- gt_linspace_align_test_2.fas
- gt_linspace_align_test_3.fas
- gt_linspace_align_test_4.fas
- gt_loccheck_containment_fail.gff3
- gt_merge_prob_1.in1
- gt_merge_prob_1.in2
- gt_merge_prob_1.out
- gt_merge_prob_2.in1
- gt_merge_prob_2.in2
- gt_merge_prob_2.out
- gt_mmapandread_test_1.in
- gt_mmapandread_test_2.in
- gt_mmapandread_test_3.in
- gt_mmapandread_test_4.in
- gt_mutate_test_1.fas
- gt_mutate_test_1.out
- gt_mutate_test_2.fas
- gt_mutate_test_2.out
- gt_mutate_test_both.out
- gt_regioncov_test_1.out
- gt_regioncov_test_2.out
- gt_select_encode.out
- gt_select_test.out
- gt_select_test_contain.1000-8999
- gt_select_test_contain.1000-9000
- gt_select_test_contain.1001-9000
- gt_seqlensort_test.fas
- gt_seqlensort_test_sorted.fas
- gt_seqorder_test.fas
- gt_seqorder_test_revsort.fas
- gt_seqorder_test_sort.fas
- gt_seqorder_test_sorthdr.fas
- gt_seqorder_test_sortlength.fas
- gt_sequniq_rev_bug.fas
- gt_sequniq_rev_bug.out
- gt_sketch_multiline_without_parent.gff3
- gt_sketch_textwidth.gff3
- gt_sketch_textwidth_0.recmaps
- gt_sketch_textwidth_1.recmaps
- gt_sketch_textwidth_2.recmaps
- gt_splicesiteinfo_prob_1.gff3
- gt_splicesiteinfo_test_1.fas
- gt_splicesiteinfo_test_1.gff3
- gt_splicesiteinfo_test_1.out
- gt_splicesiteinfo_test_2.fas
- gt_splicesiteinfo_test_2.gff3
- gt_splicesiteinfo_test_2.out
- gt_splicesiteinfo_test_3.gff3
- gt_splicesiteinfo_test_4.fas
- gt_splicesiteinfo_test_4.gff3
- gt_splicesiteinfo_test_4.out
- gt_splicesiteinfo_test_5.fas
- gt_splicesiteinfo_test_5.gff3
- gt_splicesiteinfo_test_5.out
- gt_splicesiteinfo_test_6.gff3
- gt_splicesiteinfo_test_6.mapping
- gt_stat_cdslengthdistri.out
- gt_stat_exonnumberdistri_encode.out
- gt_stat_exonnumberdistri_standard.out
- gt_stat_source.out
- gt_stat_test_1.out
- gt_stat_test_2.out
- gt_stat_test_3.out
- gt_stat_test_4.out
- gt_stat_test_5.out
- gt_stat_test_6.out
- gt_translate.in
- gt_translate.out
- gt_uniq_test_1.gff3
- gt_uniq_test_1.out
- gt_uniq_test_2.gff3
- gt_uniq_test_2.out
- gt_uniq_test_3.gff3
- gt_uniq_test_3.out
- gt_uniq_test_4.gff3
- gt_uniq_test_4.out
- gt_uniq_test_5.gff3
- gt_uniq_test_5.out
- gt_uniq_test_6.gff3
- gt_uniq_test_6.out
- gt_view.sh
- gt_view_prob_1.gff3
- gt_view_prob_2.gff3
- header.gff3
- header_3_1_21.gff3
- identity_score_matrix
- illegal_is_circular_value.gff3
- illegal_uppercase_attribute.gff3
- inconsistent_sequence_ids.gff3
- interfeat_pseudo.gff3
- interfeat_pseudo.out
- invalidregex.XRF_abbr
- invalidtag.XRF_abbr
- is_circular_example.gff3
- is_circular_example_with_sequence_region.gff3
- linesort_test_1.gff3
- linesort_test_1.out
- linesort_test_2.gff3
- linesort_test_2.out
- linesort_test_3.gff3
- linesort_test_3.out
- lua_aaseq.fas
- lua_dnaseq.fas
- marker.fas
- marker.out
- match_part_gap.gff3
- matchtool_blast.db
- matchtool_blast.match
- matchtool_blast.match.bz2
- matchtool_blast.match.gz
- matchtool_blast.out
- matchtool_blast_corrupt.match
- matchtool_blast_empty.match
- matchtool_blast_empty.out
- matchtool_blast_neg.match
- matchtool_blast_too_few.match
- matchtool_blast_too_many.match
- matchtool_blastalln.out
- matchtool_blastallp.out
- matchtool_blastn.db
- matchtool_blastn.out
- matchtool_blastn.query
- matchtool_blastp.db
- matchtool_blastp.out
- matchtool_blastp.query
- matchtool_open.match
- matchtool_open.match.bz2
- matchtool_open.match.gz
- matchtool_open.out
- matchtool_open_corrupt.match
- matchtool_open_empty.match
- matchtool_open_empty.out
- matchtool_open_neg.match
- matchtool_open_too_few.match
- matchtool_open_too_many.match
- matchtool_see-ext.match
- md5_seqid_missing_seqid.gff3
- md5_seqid_too_short.gff3
- md5_seqid_wrong_separator.gff3
- merge_with_seq.gff3
- mergefeat.gff3
- mergefeat.out
- mergefeat_no_merge.gff3
- meta_directives.gff3
- mini_peptide_repeats.fas
- minimal_fasta.gff3
- minimal_fasta_without_directive.gff3
- missing_gff3_header.gff3
- missingabbr.XRF_abbr
- multi_feature_different_sequence_id.gff3
- multi_feature_multi.gff3
- multi_feature_orphan_fail.gff3
- multi_feature_orphan_succ.gff3
- multi_feature_simple.gff3
- multi_feature_simple_reverted.gff3
- multi_feature_undefined_parent.gff3
- multi_feature_with_different_parent_1.gff3
- multi_feature_with_different_parent_1_tidy.gff3
- multi_feature_with_different_parent_2.gff3
- multi_feature_with_different_parent_2_tidy.gff3
- multiple_header_lines.gff3
- multiple_top_level_parents.gff3
- not_sorted.gff3
- nowildcardatend.fna
- nowildcardatend_rev.fna
- order_sketch_out.txt
- orphaned_parent.gff3
- png_devel_1.gff3
- png_devel_10.gff3
- png_devel_11.gff3
- png_devel_12.gff3
- png_devel_2.gff3
- png_devel_3.gff3
- png_devel_4.gff3
- png_devel_5.gff3
- png_devel_6.gff3
- png_devel_7.gff3
- png_devel_8.gff3
- png_devel_9.gff3
- png_prob_1.gff3
- png_prob_2.gff3
- png_prob_3.gff3
- png_prob_4.gff3
- png_prob_5.gff3
- png_test_1.gff3
- png_test_3.gff3
- problematic.fas
- pseudo_feature_minimal.gff3
- Q1.gz
- query-fwd.match
- query-rev.match
- Query1
- Query2
- Query3
- Random-Small.embl
- Random-Small.fna
- Random-Small.gbk
- Random.embl
- Random.fna
- Random.gbk
- Random.magicmatch
- Random159.embl
- Random159.fna
- Random159.gbk
- Random160.embl
- Random160.fna
- Random160.gbk
- Random80.fna
- RandomN.embl
- RandomN.fna
- RandomN.gbk
- RandomN.magicmatch
- rcr_testreads.fq
- rcr_testreads_on_seq.bam
- rcr_testreads_on_seq.bam.bai
- rcr_testreads_on_seq.sam
- rcr_testseq.fa
- rcr_testseq.fa.fai
- Reads1.fna
- Reads2-spmitv.txt
- Reads2.fna
- Reads3.fna
- Reference1
- Reference2
- regionmapping_1.lua
- regionmapping_2.lua
- regionmapping_3.lua
- regionmapping_4.lua
- regionmapping_5.lua
- regionmapping_6.lua
- Repfind-example.fna
- resetsource.gff3
- resetsource.out
- retain_1.gff3
- retain_2.gff3
- retain_both.gff3
- retainids.gff3
- reverse_feature_order.gff3
- reverse_feature_order.out
- reverse_feature_order_multiple_parents.gff3
- reverse_feature_order_multiple_parents.out
- reverse_standard_gene_as_tree.gff3
- revision_numbers.gff3
- revision_numbers.out
- sain.fna
- Scaffold_102.fa
- Scaffold_102.gff3
- Scaffold_102.joined.out
- Scaffold_102.out
- script_example.out
- script_filter_output.txt
- see-ext-ani-at1MB-U8.txt
- see-ext-at1MB-400-al-from-dtrace.matches
- see-ext-at1MB-400-cigar.matches
- see-ext-at1MB-400-cigarX.matches
- see-ext-at1MB-400-dtrace.matches
- see-ext-at1MB-400-evalue-bitscore.matches
- see-ext-at1MB-400-seqdesc.matches
- see-ext-at1MB-400-seqlength.matches
- see-ext-at1MB-400-trace.matches
- see-ext-at1MB-500-al.matches
- see-ext-at1MB-500-alignment-seed_in_algn.matches
- see-ext-at1MB-500-failed_seed.matches
- see-ext-at1MB-Atinsert100-evalue-bitscore-cigar-seqlength.matches
- see-ext-at1MB-Atinsert100-evalue-bitscore-cigarX-seqlength.matches
- see-ext-at1MB-maxmat250.matches
- see-ext-at1MB-mincoverage200-tabsep.matches
- see-ext-at1MB-U8-200-al-from-dtrace.matches
- see-ext-at1MB-u8-failed_seed-evalue.matches
- see-ext-at1MB-u8-maxmat30.matches
- see-ext-at1MB-u8.matches
- see-ext-at1MB.matches
- see-ext-fastq_long-u8.matches
- see-ext-fastq_long.matches
- see-ext-paired-u8.matches
- see-ext-paired.matches
- see-ext-U8-evalue-bitscore.matches
- seedextend1.out.gz
- seedextend2.out.gz
- seedextend3.out
- self_referential.gff3
- seqfilter_prot_wildcard.fas
- seqfilter_prot_wildcard_no_wildcards.fas
- sequence_region_1.gff3
- sequence_region_2.gff3
- sequence_region_joined.gff3
- sequence_region_negative_end.gff3
- sequence_region_negative_start.gff3
- shorten_desc.clipped.fas
- shorten_desc.embl
- shorten_desc.fas
- shorten_desc.gbk
- shorthand.XRF_abbr
- simple_orphan.gff3
- Small.embl
- Small.fna
- Small.gbk
- small_poly.fas
- Smalldup.fna
- solid_color_reads.fastq
- splice_site_prob.gff3
- splice_site_prob.out
- Splintoptions
- standard_fasta_example.fas
- standard_fasta_example.gff3
- standard_fasta_example_only_annotation.gff3
- standard_fasta_example_rejoined.gff3
- standard_fasta_example_with_id.gff3
- standard_fasta_example_with_id.out
- standard_gene_as_dag.gff3
- standard_gene_as_dag_sorted.gff3
- standard_gene_as_tree.blocks
- standard_gene_as_tree.gff3
- standard_gene_as_tree.header
- standard_gene_as_tree.hotspots
- standard_gene_as_tree.recmaps
- standard_gene_as_tree.types
- standard_gene_simple.gff3
- standard_gene_with_introns_as_tree.gff3
- sw100K1.fsa
- sw100K1.magicmatch
- sw100K2.fsa
- sw100K2.magicmatch
- target_attribute_swapped_range.gff3
- target_attribute_without_strand.gff3
- terminator_separation.gff3
- test.XRF_abbr
- test1.fasta
- test1.fastq
- test10_multiline.fastq
- test2_wrong_begin.fastq
- test3_different_seqnames.fastq
- test4_different_seqlengths.fastq
- test5_tricky.fastq
- test6_premature_end.fastq
- test7_empty_seq.fastq
- test9_uneven_length.fastq
- test_1_multiset.txt
- test_1_result.txt
- test_1_text.txt
- test_2_multiset.txt
- test_2_result.txt
- test_2_text.txt
- test_3_multiset.txt
- test_3_result.txt
- test_3_text.txt
- testspec.lua
- testspec_fi.lua
- trackname1.out
- trackname1.style
- transcript.gff3
- transcript.png
- transcript.style
- transient_edges_bug.gff3
- trembl-difflenkey.faa
- trembl-emptykey.faa
- trembl-eqlen.faa
- trembl-keys.txt
- trembl-wrongkey.txt
- trembl.faa
- trkeys-result.txt
- trkeys.txt
- tRNA.dos.fas
- trna_glutamine.embl
- trna_glutamine.fna
- trna_glutamine.gbk
- trna_glutamine.out
- TTT-small-wrongchar.embl
- TTT-small-wrongchar.fna
- TTT-small-wrongchar.gbk
- TTT-small.embl
- TTT-small.fna
- TTT-small.gbk
- TTTN.fna
- two_fasta_seqs.gff3
- two_fasta_seqs_without_sequence_regions.gff3
- U89959_cds.fas
- U89959_cds.gff3
- U89959_cds_1.fas
- U89959_cds_10.fas
- U89959_cds_11.fas
- U89959_cds_12.fas
- U89959_cds_13.fas
- U89959_cds_14.fas
- U89959_cds_16.fas
- U89959_cds_2.fas
- U89959_cds_21.fas
- U89959_cds_22.fas
- U89959_cds_23.fas
- U89959_cds_24.fas
- U89959_cds_25.fas
- U89959_cds_3.fas
- U89959_cds_4.fas
- U89959_cds_5.fas
- U89959_cds_6.fas
- U89959_cds_9.fas
- U89959_csas.gff3
- U89959_csas.gff3md5
- U89959_csas.gff3md5old
- U89959_ests.checklist
- U89959_ests.checklist_uniq
- U89959_ests.fas
- U89959_ests.magicmatch
- U89959_ests_gi_8690080_soft_masked.fas
- U89959_ests_gi_8690080_unmasked.checklist
- U89959_ests_no_wildcards.fas
- U89959_ests_unique.fas
- U89959_genomic.fas
- U89959_genomic.magicmatch
- U89959_ginums.corrupt
- U89959_ginums.out
- U89959_ginums.txt
- U89959_sas.gff3
- U89959_sas.gff3md5
- U89959_sas.gff3md5old
- U89959_sas.minus_targets
- undefined_parent.gff3
- unknown_meta_directive.gff3
- unknown_meta_directive_without_argument.gff3
- unsorted_gff3_file.txt
- uppercase_attributes.gff3
- Verysmall.embl
- Verysmall.fna
- Verysmall.gbk
- wildcardatend.fna
- wildcardatend_rev.fna
see-ext-at1MB-400-seqdesc.matches @HEAD — raw · history · blame
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 | # Options: -ii at1MB -l 400 -outfmt subjectid queryid -minidentity 80 -history 60 # Fields: s. len, subject id, s. start, strand, q. len, query id, q. start, score, editdist, % identity 597 gi|4714049|dbj|C99932.1|C99932 0 F 592 gi|4714046|dbj|C99929.1|C99929 7 898 97 83.68 538 gi|4714049|dbj|C99932.1|C99932 9 F 523 gi|4714003|dbj|C99879.1|C99879 0 779 94 82.28 577 gi|4714048|dbj|C99931.1|C99931 72 F 606 gi|4714047|dbj|C99930.1|C99930 0 916 89 84.95 626 gi|4714048|dbj|C99931.1|C99931 34 F 656 gi|4714045|dbj|C99928.1|C99928 0 1063 73 88.61 484 gi|4714048|dbj|C99931.1|C99931 176 F 513 gi|4714044|dbj|C99927.1|C99927 104 730 89 82.15 706 gi|4714048|dbj|C99931.1|C99931 0 F 749 gi|4714034|dbj|C99916.1|C99916 84 1269 62 91.48 660 gi|4714048|dbj|C99931.1|C99931 0 F 687 gi|4714011|dbj|C99887.1|C99887 0 1065 94 86.04 668 gi|4714047|dbj|C99930.1|C99930 0 F 660 gi|4714045|dbj|C99928.1|C99928 38 1139 63 90.51 639 gi|4714047|dbj|C99930.1|C99930 14 F 631 gi|4714044|dbj|C99927.1|C99927 14 1063 69 89.13 655 gi|4714047|dbj|C99930.1|C99930 0 F 650 gi|4714034|dbj|C99916.1|C99916 156 1047 86 86.82 653 gi|4714047|dbj|C99930.1|C99930 0 F 643 gi|4714011|dbj|C99887.1|C99887 72 1203 31 95.22 613 gi|4714046|dbj|C99929.1|C99929 16 F 571 gi|4714003|dbj|C99879.1|C99879 0 1022 54 90.88 704 gi|4714045|dbj|C99928.1|C99928 52 F 700 gi|4714044|dbj|C99927.1|C99927 14 1056 116 83.48 742 gi|4714045|dbj|C99928.1|C99928 0 F 746 gi|4714034|dbj|C99916.1|C99916 118 1323 55 92.61 756 gi|4714045|dbj|C99928.1|C99928 0 F 750 gi|4714011|dbj|C99887.1|C99887 34 1275 77 89.77 599 gi|4714044|dbj|C99927.1|C99927 104 F 601 gi|4714034|dbj|C99916.1|C99916 260 915 95 84.17 783 gi|4714044|dbj|C99927.1|C99927 14 F 788 gi|4714011|dbj|C99887.1|C99887 86 1400 57 92.74 467 gi|4714039|dbj|C99921.1|C99921 135 F 449 gi|4714021|dbj|C99899.1|C99899 138 766 50 89.08 767 gi|4714034|dbj|C99916.1|C99916 84 F 766 gi|4714011|dbj|C99887.1|C99887 0 1248 95 87.61 397 gi|4714032|dbj|C99913.1|C99913 0 F 417 gi|4714004|dbj|C99880.1|C99880 194 634 60 85.26 458 gi|4714016|dbj|C99892.1|C99892 157 F 442 gi|3449622|gb|AI099883.1|AI099883 0 789 37 91.78 399 gi|4714015|dbj|C99891.1|C99891 140 F 402 gi|4713978|dbj|C99852.1|C99852 145 717 28 93.01 430 gi|4713989|dbj|C99864.1|C99864 134 F 438 gi|4713985|dbj|C99860.1|C99860 137 787 27 93.78 517 gi|4713986|dbj|C99861.1|C99861 0 F 517 gi|4713985|dbj|C99860.1|C99860 0 1034 0 100.00 461 gi|4239693|emb|AJ132746.1|AJ132746 86 F 459 gi|4239689|emb|AJ132743.1|AJ132743 149 800 40 91.30 542 gi|4239693|emb|AJ132746.1|AJ132746 223 F 540 gi|3449451|gb|AI099712.1|AI099712 8 995 29 94.64 568 gi|4239690|emb|AJ132744.1|AJ132744 56 F 568 gi|3449444|gb|AI099705.1|AI099705 0 1022 38 93.31 417 gi|3719174|dbj|C99817.1|C99817 0 F 414 gi|3719126|dbj|C99769.1|C99769 2 801 10 97.59 418 gi|3719168|dbj|C99811.1|C99811 0 F 419 gi|3719127|dbj|C99770.1|C99770 0 828 3 99.28 418 gi|3450621|gb|AI100660.1|AI100660 13 F 428 gi|2764257|gb|R65162.1|R65162 142 621 75 82.27 405 gi|3450603|gb|AI100642.1|AI100642 36 F 419 gi|2764247|gb|R65127.1|R65127 0 734 30 92.72 439 gi|3450563|gb|AI100602.1|AI100602 0 F 450 gi|2764256|gb|R65161.1|R65161 81 703 62 86.05 400 gi|3450559|gb|AI100598.1|AI100598 1 F 408 gi|3450488|gb|AI100527.1|AI100527 26 766 14 96.53 403 gi|3450559|gb|AI100598.1|AI100598 0 F 406 gi|3450309|gb|AI100348.1|AI100348 10 722 29 92.83 401 gi|3450559|gb|AI100598.1|AI100598 0 F 404 gi|3450203|gb|AI100242.1|AI100242 106 784 7 98.26 400 gi|3450559|gb|AI100598.1|AI100598 3 F 403 gi|3450093|gb|AI100132.1|AI100132 215 773 10 97.51 403 gi|3450559|gb|AI100598.1|AI100598 0 F 407 gi|3450037|gb|AI100754.1|AI100754 16 783 9 97.78 401 gi|3450559|gb|AI100598.1|AI100598 2 F 408 gi|3449839|gb|AI099527.1|AI099527 35 740 23 94.31 401 gi|3450559|gb|AI100598.1|AI100598 2 F 407 gi|3449796|gb|AI100057.1|AI100057 2 721 29 92.82 403 gi|3450559|gb|AI100598.1|AI100598 0 F 407 gi|3449788|gb|AI100049.1|AI100049 49 786 8 98.02 403 gi|3450559|gb|AI100598.1|AI100598 0 F 409 gi|3449709|gb|AI099970.1|AI099970 104 773 13 96.80 399 gi|3450559|gb|AI100598.1|AI100598 0 F 406 gi|3449579|gb|AI099840.1|AI099840 9 730 25 93.79 475 gi|3450535|gb|AI100574.1|AI100574 165 F 466 gi|3450120|gb|AI100159.1|AI100159 35 809 44 90.65 418 gi|3450535|gb|AI100574.1|AI100574 186 F 420 gi|3449964|gb|AI099652.1|AI099652 52 760 26 93.79 420 gi|3450535|gb|AI100574.1|AI100574 213 F 444 gi|3449577|gb|AI099838.1|AI099838 2 699 55 87.27 453 gi|3450535|gb|AI100574.1|AI100574 187 F 455 gi|3449439|gb|AI099700.1|AI099700 29 806 34 92.51 434 gi|3450533|gb|AI100572.1|AI100572 8 F 430 gi|3450397|gb|AI100436.1|AI100436 0 771 31 92.82 402 gi|3450533|gb|AI100572.1|AI100572 40 F 413 gi|3449883|gb|AI099571.1|AI099571 0 713 34 91.66 430 gi|3450527|gb|AI100566.1|AI100566 83 F 436 gi|3449414|gb|AI099675.1|AI099675 0 755 37 91.45 434 gi|3450513|gb|AI100552.1|AI100552 27 F 429 gi|3450144|gb|AI100183.1|AI100183 0 722 47 89.11 409 gi|3450507|gb|AI100546.1|AI100546 9 F 410 gi|3450287|gb|AI100326.1|AI100326 0 735 28 93.16 422 gi|3450507|gb|AI100546.1|AI100546 0 F 423 gi|3450114|gb|AI100153.1|AI100153 61 791 18 95.74 397 gi|3450507|gb|AI100546.1|AI100546 0 F 403 gi|3449470|gb|AI099731.1|AI099731 51 728 24 94.00 423 gi|3450490|gb|AI100529.1|AI100529 0 F 421 gi|3450071|gb|AI100110.1|AI100110 143 802 14 96.68 434 gi|3450488|gb|AI100527.1|AI100527 0 F 427 gi|3450203|gb|AI100242.1|AI100242 83 825 12 97.21 434 gi|3450488|gb|AI100527.1|AI100527 0 F 427 gi|3450093|gb|AI100132.1|AI100132 189 816 15 96.52 424 gi|3450488|gb|AI100527.1|AI100527 10 F 420 gi|3450037|gb|AI100754.1|AI100754 1 787 19 95.50 434 gi|3450488|gb|AI100527.1|AI100527 0 F 429 gi|3449839|gb|AI099527.1|AI099527 12 764 33 92.35 434 gi|3450488|gb|AI100527.1|AI100527 0 F 428 gi|3449788|gb|AI100049.1|AI100049 26 823 13 96.98 434 gi|3450488|gb|AI100527.1|AI100527 0 F 431 gi|3449709|gb|AI099970.1|AI099970 80 805 20 95.38 417 gi|3450488|gb|AI100527.1|AI100527 15 F 414 gi|3449579|gb|AI099840.1|AI099840 1 726 35 91.58 415 gi|3450487|gb|AI100526.1|AI100526 0 F 413 gi|3450057|gb|AI100096.1|AI100096 3 750 26 93.72 424 gi|3450485|gb|AI100524.1|AI100524 70 F 432 gi|2764113|gb|R30496.1|R30496 0 793 21 95.09 453 gi|3450479|gb|AI100518.1|AI100518 27 F 452 gi|3449588|gb|AI099849.1|AI099849 0 821 28 93.81 492 gi|3450465|gb|AI100504.1|AI100504 48 F 480 gi|3450396|gb|AI100435.1|AI100435 0 903 23 95.27 540 gi|3450465|gb|AI100504.1|AI100504 0 F 522 gi|3450281|gb|AI100320.1|AI100320 80 975 29 94.54 454 gi|3450465|gb|AI100504.1|AI100504 86 F 440 gi|3450226|gb|AI100265.1|AI100265 0 786 36 91.95 423 gi|3450465|gb|AI100504.1|AI100504 0 F 408 gi|3450203|gb|AI100242.1|AI100242 18 693 46 88.93 435 gi|3450465|gb|AI100504.1|AI100504 105 F 433 gi|3450141|gb|AI100180.1|AI100180 0 811 19 95.62 480 gi|3450465|gb|AI100504.1|AI100504 35 F 479 gi|3450113|gb|AI100152.1|AI100152 2 914 15 96.87 423 gi|3450465|gb|AI100504.1|AI100504 0 F 418 gi|3450093|gb|AI100132.1|AI100132 114 685 52 87.63 422 gi|3450465|gb|AI100504.1|AI100504 118 F 417 gi|3450090|gb|AI100129.1|AI100129 0 758 27 93.56 488 gi|3450465|gb|AI100504.1|AI100504 47 F 483 gi|3450027|gb|AI100744.1|AI100744 0 932 13 97.32 407 gi|3450465|gb|AI100504.1|AI100504 57 F 407 gi|3449951|gb|AI099639.1|AI099639 0 664 50 87.71 419 gi|3450465|gb|AI100504.1|AI100504 45 F 417 gi|3449890|gb|AI099578.1|AI099578 0 722 38 90.91 453 gi|3450465|gb|AI100504.1|AI100504 87 F 444 gi|3449819|gb|AI100080.1|AI100080 0 798 33 92.64 422 gi|3450465|gb|AI100504.1|AI100504 1 F 425 gi|3449709|gb|AI099970.1|AI099970 2 679 56 86.78 500 gi|3450465|gb|AI100504.1|AI100504 40 F 475 gi|3449642|gb|AI099903.1|AI099903 0 852 41 91.59 447 gi|3450465|gb|AI100504.1|AI100504 68 F 436 gi|3449612|gb|AI099873.1|AI099873 0 775 36 91.85 409 gi|3450459|gb|AI100498.1|AI100498 46 F 398 gi|3450013|gb|AI100730.1|AI100730 0 744 21 94.80 425 gi|3450450|gb|AI100489.1|AI100489 0 F 429 gi|3449600|gb|AI099861.1|AI099861 12 806 16 96.25 409 gi|3450417|gb|AI100456.1|AI100456 41 F 410 gi|3449805|gb|AI100066.1|AI100066 0 723 32 92.19 406 gi|3450409|gb|AI100448.1|AI100448 14 F 398 gi|3449596|gb|AI099857.1|AI099857 30 735 23 94.28 422 gi|3450403|gb|AI100442.1|AI100442 58 F 414 gi|3449857|gb|AI099545.1|AI099545 12 755 27 93.54 400 gi|3450397|gb|AI100436.1|AI100436 30 F 413 gi|3449883|gb|AI099571.1|AI099571 0 738 25 93.85 477 gi|3450396|gb|AI100435.1|AI100435 3 F 476 gi|3450281|gb|AI100320.1|AI100320 126 890 21 95.59 436 gi|3450396|gb|AI100435.1|AI100435 44 F 429 gi|3450226|gb|AI100265.1|AI100265 11 793 24 94.45 429 gi|3450396|gb|AI100435.1|AI100435 51 F 430 gi|3450141|gb|AI100180.1|AI100180 3 793 22 94.88 455 gi|3450396|gb|AI100435.1|AI100435 0 F 466 gi|3450113|gb|AI100152.1|AI100152 15 852 23 95.01 419 gi|3450396|gb|AI100435.1|AI100435 61 F 416 gi|3450090|gb|AI100129.1|AI100129 1 748 29 93.05 475 gi|3450396|gb|AI100435.1|AI100435 0 F 482 gi|3450027|gb|AI100744.1|AI100744 1 897 20 95.82 397 gi|3450396|gb|AI100435.1|AI100435 7 F 407 gi|3449951|gb|AI099639.1|AI099639 0 633 57 85.82 404 gi|3450396|gb|AI100435.1|AI100435 0 F 414 gi|3449890|gb|AI099578.1|AI099578 3 677 47 88.51 447 gi|3450396|gb|AI100435.1|AI100435 33 F 444 gi|3449819|gb|AI100080.1|AI100080 0 798 31 93.04 480 gi|3450396|gb|AI100435.1|AI100435 0 F 468 gi|3449642|gb|AI099903.1|AI099903 7 855 31 93.46 439 gi|3450396|gb|AI100435.1|AI100435 16 F 436 gi|3449612|gb|AI099873.1|AI099873 0 782 31 92.91 436 gi|3450390|gb|AI100429.1|AI100429 0 F 448 gi|3450278|gb|AI100317.1|AI100317 68 773 37 91.63 402 gi|3450371|gb|AI100410.1|AI100410 10 F 406 gi|2764157|gb|R64802.1|R64802 2 739 23 94.31 432 gi|3450355|gb|AI100394.1|AI100394 48 F 449 gi|2764289|gb|R65285.1|R65285 0 707 58 86.83 412 gi|3450309|gb|AI100348.1|AI100348 2 F 414 gi|3450203|gb|AI100242.1|AI100242 96 730 32 92.25 415 gi|3450309|gb|AI100348.1|AI100348 1 F 416 gi|3450093|gb|AI100132.1|AI100132 202 729 34 91.82 415 gi|3450309|gb|AI100348.1|AI100348 1 F 419 gi|3450037|gb|AI100754.1|AI100754 4 732 34 91.85 416 gi|3450309|gb|AI100348.1|AI100348 0 F 420 gi|3449839|gb|AI099527.1|AI099527 23 719 39 90.67 425 gi|3450309|gb|AI100348.1|AI100348 9 F 426 gi|3449796|gb|AI100057.1|AI100057 1 728 41 90.36 415 gi|3450309|gb|AI100348.1|AI100348 1 F 418 gi|3449788|gb|AI100049.1|AI100049 38 737 32 92.32 416 gi|3450309|gb|AI100348.1|AI100348 0 F 421 gi|3449709|gb|AI099970.1|AI099970 92 732 35 91.64 409 gi|3450309|gb|AI100348.1|AI100348 3 F 414 gi|3449579|gb|AI099840.1|AI099840 1 688 45 89.06 400 gi|3450287|gb|AI100326.1|AI100326 10 F 401 gi|3450114|gb|AI100153.1|AI100153 79 711 30 92.51 412 gi|3450285|gb|AI100324.1|AI100324 1 F 407 gi|3450132|gb|AI100171.1|AI100171 63 711 36 91.21 440 gi|3450285|gb|AI100324.1|AI100324 1 F 432 gi|3450073|gb|AI100112.1|AI100112 142 719 51 88.30 461 gi|3450285|gb|AI100324.1|AI100324 0 F 461 gi|3449727|gb|AI099988.1|AI099988 120 799 41 91.11 441 gi|3450281|gb|AI100320.1|AI100320 161 F 438 gi|3450226|gb|AI100265.1|AI100265 2 777 34 92.26 425 gi|3450281|gb|AI100320.1|AI100320 60 F 426 gi|3450203|gb|AI100242.1|AI100242 0 683 56 86.84 428 gi|3450281|gb|AI100320.1|AI100320 174 F 433 gi|3450141|gb|AI100180.1|AI100180 0 795 22 94.89 467 gi|3450281|gb|AI100320.1|AI100320 110 F 481 gi|3450113|gb|AI100152.1|AI100152 0 867 27 94.30 465 gi|3450281|gb|AI100320.1|AI100320 20 F 485 gi|3450093|gb|AI100132.1|AI100132 47 737 71 85.05 416 gi|3450281|gb|AI100320.1|AI100320 186 F 416 gi|3450090|gb|AI100129.1|AI100129 1 763 23 94.47 471 gi|3450281|gb|AI100320.1|AI100320 126 F 479 gi|3450027|gb|AI100744.1|AI100744 4 896 18 96.21 395 gi|3450281|gb|AI100320.1|AI100320 131 F 407 gi|3449951|gb|AI099639.1|AI099639 0 646 52 87.03 395 gi|3450281|gb|AI100320.1|AI100320 131 F 405 gi|3449890|gb|AI099578.1|AI099578 12 677 41 89.75 444 gi|3450281|gb|AI100320.1|AI100320 158 F 444 gi|3449819|gb|AI100080.1|AI100080 0 786 34 92.34 397 gi|3450281|gb|AI100320.1|AI100320 88 F 416 gi|3449709|gb|AI099970.1|AI099970 11 624 63 84.50 486 gi|3450281|gb|AI100320.1|AI100320 116 F 475 gi|3449642|gb|AI099903.1|AI099903 0 853 36 92.51 437 gi|3450281|gb|AI100320.1|AI100320 140 F 436 gi|3449612|gb|AI099873.1|AI099873 0 777 32 92.67 415 gi|3450248|gb|AI100287.1|AI100287 0 F 433 gi|3450125|gb|AI100164.1|AI100164 49 722 42 90.09 421 gi|3450244|gb|AI100283.1|AI100283 59 F 427 gi|3450001|gb|AI100718.1|AI100718 0 761 29 93.16 432 gi|3450238|gb|AI100277.1|AI100277 5 F 422 gi|3450224|gb|AI100263.1|AI100263 7 731 41 90.40 423 gi|3450226|gb|AI100265.1|AI100265 17 F 432 gi|3450141|gb|AI100180.1|AI100180 1 753 34 92.05 415 gi|3450226|gb|AI100265.1|AI100265 0 F 428 gi|3450113|gb|AI100152.1|AI100152 53 729 38 90.98 413 gi|3450226|gb|AI100265.1|AI100265 27 F 417 gi|3450090|gb|AI100129.1|AI100129 0 710 40 90.36 435 gi|3450226|gb|AI100265.1|AI100265 0 F 446 gi|3450027|gb|AI100744.1|AI100744 37 782 33 92.51 437 gi|3450226|gb|AI100265.1|AI100265 3 F 442 gi|3449819|gb|AI100080.1|AI100080 2 789 30 93.17 437 gi|3450226|gb|AI100265.1|AI100265 3 F 437 gi|3449642|gb|AI099903.1|AI099903 38 769 35 91.99 414 gi|3450226|gb|AI100265.1|AI100265 1 F 420 gi|3449612|gb|AI099873.1|AI099873 16 723 37 91.13 382 gi|3450215|gb|AI100254.1|AI100254 29 F 433 gi|2764124|gb|R30550.1|R30550 2 605 70 82.82 510 gi|3450203|gb|AI100242.1|AI100242 0 F 525 gi|3450093|gb|AI100132.1|AI100132 91 915 40 92.27 414 gi|3450203|gb|AI100242.1|AI100242 96 F 416 gi|3450037|gb|AI100754.1|AI100754 5 800 10 97.59 435 gi|3450203|gb|AI100242.1|AI100242 75 F 437 gi|3449839|gb|AI099527.1|AI099527 4 782 30 93.12 406 gi|3450203|gb|AI100242.1|AI100242 104 F 407 gi|3449796|gb|AI100057.1|AI100057 0 726 29 92.87 452 gi|3450203|gb|AI100242.1|AI100242 58 F 454 gi|3449788|gb|AI100049.1|AI100049 0 876 10 97.79 485 gi|3450203|gb|AI100242.1|AI100242 25 F 500 gi|3449709|gb|AI099970.1|AI099970 11 898 29 94.11 411 gi|3450203|gb|AI100242.1|AI100242 97 F 414 gi|3449579|gb|AI099840.1|AI099840 1 747 26 93.70 408 gi|3450141|gb|AI100180.1|AI100180 0 F 407 gi|3450113|gb|AI100152.1|AI100152 74 755 20 95.09 420 gi|3450141|gb|AI100180.1|AI100180 13 F 417 gi|3450090|gb|AI100129.1|AI100129 0 723 38 90.92 428 gi|3450141|gb|AI100180.1|AI100180 0 F 428 gi|3450027|gb|AI100744.1|AI100744 55 796 20 95.33 432 gi|3450141|gb|AI100180.1|AI100180 1 F 428 gi|3449819|gb|AI100080.1|AI100080 16 752 36 91.63 430 gi|3450141|gb|AI100180.1|AI100180 3 F 423 gi|3449642|gb|AI099903.1|AI099903 52 766 29 93.20 405 gi|3450141|gb|AI100180.1|AI100180 3 F 402 gi|3449612|gb|AI099873.1|AI099873 34 714 31 92.32 468 gi|3450132|gb|AI100171.1|AI100171 2 F 464 gi|3450073|gb|AI100112.1|AI100112 82 800 44 90.56 468 gi|3450132|gb|AI100171.1|AI100171 2 F 476 gi|3449727|gb|AI099988.1|AI099988 57 824 40 91.53 445 gi|3450124|gb|AI100163.1|AI100163 0 F 462 gi|2764251|gb|R65142.1|R65142 0 778 43 90.52 451 gi|3450120|gb|AI100159.1|AI100159 14 F 467 gi|3449964|gb|AI099652.1|AI099652 5 810 36 92.16 418 gi|3450120|gb|AI100159.1|AI100159 76 F 443 gi|3449577|gb|AI099838.1|AI099838 3 726 45 89.55 484 gi|3450120|gb|AI100159.1|AI100159 35 F 494 gi|3449439|gb|AI099700.1|AI099700 8 882 32 93.46 432 gi|3450114|gb|AI100153.1|AI100153 27 F 441 gi|3449470|gb|AI099731.1|AI099731 13 765 36 91.75 467 gi|3450113|gb|AI100152.1|AI100152 14 F 463 gi|3450027|gb|AI100744.1|AI100744 0 873 19 95.91 409 gi|3450113|gb|AI100152.1|AI100152 12 F 407 gi|3449890|gb|AI099578.1|AI099578 0 702 38 90.69 426 gi|3450113|gb|AI100152.1|AI100152 55 F 419 gi|3449819|gb|AI100080.1|AI100080 0 743 34 91.95 474 gi|3450113|gb|AI100152.1|AI100152 7 F 450 gi|3449642|gb|AI099903.1|AI099903 0 801 41 91.13 446 gi|3450113|gb|AI100152.1|AI100152 35 F 436 gi|3449612|gb|AI099873.1|AI099873 0 774 36 91.84 419 gi|3450093|gb|AI100132.1|AI100132 199 F 422 gi|3450037|gb|AI100754.1|AI100754 1 793 16 96.20 434 gi|3450093|gb|AI100132.1|AI100132 184 F 437 gi|3449839|gb|AI099527.1|AI099527 6 772 33 92.42 454 gi|3450093|gb|AI100132.1|AI100132 164 F 456 gi|3449788|gb|AI100049.1|AI100049 0 859 17 96.26 503 gi|3450093|gb|AI100132.1|AI100132 115 F 511 gi|3449709|gb|AI099970.1|AI099970 2 879 45 91.12 410 gi|3450093|gb|AI100132.1|AI100132 204 F 414 gi|3449579|gb|AI099840.1|AI099840 1 731 31 92.48 447 gi|3450091|gb|AI100130.1|AI100130 138 F 476 gi|2764292|gb|R65289.1|R65289 0 737 62 86.57 412 gi|3450090|gb|AI100129.1|AI100129 0 F 415 gi|3450027|gb|AI100744.1|AI100744 68 746 27 93.47 417 gi|3450090|gb|AI100129.1|AI100129 0 F 417 gi|3449819|gb|AI100080.1|AI100080 27 705 43 89.69 417 gi|3450090|gb|AI100129.1|AI100129 0 F 413 gi|3449642|gb|AI099903.1|AI099903 62 722 36 91.33 557 gi|3450073|gb|AI100112.1|AI100112 17 F 561 gi|3449727|gb|AI099988.1|AI099988 0 884 78 86.05 405 gi|3450072|gb|AI100111.1|AI100111 233 F 417 gi|2764348|gb|R65515.1|R65515 0 708 38 90.75 421 gi|3450055|gb|AI100094.1|AI100094 0 F 427 gi|3450049|gb|AI100088.1|AI100088 8 770 26 93.87 424 gi|3450047|gb|AI100764.1|AI100764 0 F 420 gi|3449639|gb|AI099900.1|AI099900 64 772 24 94.31 423 gi|3450037|gb|AI100754.1|AI100754 0 F 423 gi|3449839|gb|AI099527.1|AI099527 20 747 33 92.20 409 gi|3450037|gb|AI100754.1|AI100754 14 F 409 gi|3449796|gb|AI100057.1|AI100057 0 728 30 92.67 423 gi|3450037|gb|AI100754.1|AI100754 0 F 422 gi|3449788|gb|AI100049.1|AI100049 34 818 9 97.87 420 gi|3450037|gb|AI100754.1|AI100754 3 F 422 gi|3449709|gb|AI099970.1|AI099970 91 785 19 95.49 404 gi|3450037|gb|AI100754.1|AI100754 15 F 407 gi|3449579|gb|AI099840.1|AI099840 8 736 25 93.83 438 gi|3450034|gb|AI100751.1|AI100751 0 F 451 gi|2764257|gb|R65162.1|R65162 83 730 53 88.08 403 gi|3450027|gb|AI100744.1|AI100744 9 F 407 gi|3449951|gb|AI099639.1|AI099639 0 648 54 86.67 411 gi|3450027|gb|AI100744.1|AI100744 1 F 414 gi|3449890|gb|AI099578.1|AI099578 3 696 43 89.58 445 gi|3450027|gb|AI100744.1|AI100744 38 F 439 gi|3449819|gb|AI100080.1|AI100080 0 791 31 92.99 483 gi|3450027|gb|AI100744.1|AI100744 0 F 464 gi|3449642|gb|AI099903.1|AI099903 6 842 35 92.61 444 gi|3450027|gb|AI100744.1|AI100744 19 F 436 gi|3449612|gb|AI099873.1|AI099873 0 778 34 92.27 396 gi|3449964|gb|AI099652.1|AI099652 76 F 417 gi|3449577|gb|AI099838.1|AI099838 0 687 42 89.67 419 gi|3449964|gb|AI099652.1|AI099652 53 F 419 gi|3449439|gb|AI099700.1|AI099700 29 781 19 95.47 426 gi|3449951|gb|AI099639.1|AI099639 0 F 424 gi|3449890|gb|AI099578.1|AI099578 12 766 28 93.41 433 gi|3449890|gb|AI099578.1|AI099578 0 F 413 gi|3449642|gb|AI099903.1|AI099903 4 630 72 82.98 409 gi|3449890|gb|AI099578.1|AI099578 24 F 401 gi|3449612|gb|AI099873.1|AI099873 2 615 65 83.95 409 gi|3449842|gb|AI099530.1|AI099530 23 F 417 gi|2764144|gb|R64742.1|R64742 1 721 35 91.53 410 gi|3449839|gb|AI099527.1|AI099527 33 F 408 gi|3449796|gb|AI100057.1|AI100057 1 725 31 92.42 442 gi|3449839|gb|AI099527.1|AI099527 1 F 440 gi|3449788|gb|AI100049.1|AI100049 16 789 31 92.97 440 gi|3449839|gb|AI099527.1|AI099527 3 F 442 gi|3449709|gb|AI099970.1|AI099970 71 792 30 93.20 413 gi|3449839|gb|AI099527.1|AI099527 26 F 414 gi|3449579|gb|AI099840.1|AI099840 1 704 41 90.08 444 gi|3449819|gb|AI100080.1|AI100080 0 F 439 gi|3449642|gb|AI099903.1|AI099903 36 772 37 91.62 419 gi|3449819|gb|AI100080.1|AI100080 0 F 419 gi|3449612|gb|AI099873.1|AI099873 17 715 41 90.21 409 gi|3449796|gb|AI100057.1|AI100057 0 F 409 gi|3449788|gb|AI100049.1|AI100049 47 734 28 93.15 407 gi|3449796|gb|AI100057.1|AI100057 2 F 407 gi|3449709|gb|AI099970.1|AI099970 106 742 24 94.10 405 gi|3449796|gb|AI100057.1|AI100057 0 F 405 gi|3449579|gb|AI099840.1|AI099840 10 681 43 89.38 456 gi|3449788|gb|AI100049.1|AI100049 0 F 463 gi|3449709|gb|AI099970.1|AI099970 50 844 25 94.56 412 gi|3449788|gb|AI100049.1|AI100049 40 F 414 gi|3449579|gb|AI099840.1|AI099840 1 742 28 93.22 436 gi|3449729|gb|AI099990.1|AI099990 50 F 431 gi|3449423|gb|AI099684.1|AI099684 1 786 27 93.77 443 gi|3449713|gb|AI099974.1|AI099974 5 F 421 gi|3449643|gb|AI099904.1|AI099904 26 732 44 89.81 414 gi|3449709|gb|AI099970.1|AI099970 95 F 414 gi|3449579|gb|AI099840.1|AI099840 1 735 31 92.51 404 gi|3449671|gb|AI099932.1|AI099932 97 F 411 gi|2764323|gb|R65397.1|R65397 3 746 23 94.36 395 gi|3449671|gb|AI099932.1|AI099932 101 F 405 gi|2764203|gb|R64930.1|R64930 0 713 29 92.75 451 gi|3449645|gb|AI099906.1|AI099906 10 F 463 gi|2764164|gb|R64829.1|R64829 0 740 58 87.31 429 gi|3449642|gb|AI099903.1|AI099903 21 F 436 gi|3449612|gb|AI099873.1|AI099873 0 754 37 91.45 445 gi|3449577|gb|AI099838.1|AI099838 1 F 425 gi|3449439|gb|AI099700.1|AI099700 52 732 46 89.43 477 gi|2764330|gb|R65444.1|R65444 0 F 478 gi|2764154|gb|R64784.1|R64784 6 832 41 91.41 446 gi|2764330|gb|R65444.1|R65444 20 F 439 gi|2764013|gb|R30104.1|R30104 0 762 41 90.73 403 gi|2764323|gb|R65397.1|R65397 8 F 408 gi|2764203|gb|R64930.1|R64930 0 754 19 95.31 415 gi|2764287|gb|R65283.1|R65283 0 F 414 gi|2764057|gb|R30273.1|R30273 27 700 43 89.63 438 gi|2764254|gb|R65153.1|R65153 0 F 439 gi|2764169|gb|R64845.1|R64845 23 748 43 90.19 433 gi|2764205|gb|R64942.1|R64942 0 F 427 gi|2764186|gb|R64887.1|R64887 1 776 28 93.49 458 gi|2764205|gb|R64942.1|R64942 0 F 455 gi|2764183|gb|R64880.1|R64880 0 829 28 93.87 450 gi|2764205|gb|R64942.1|R64942 9 F 443 gi|2764068|gb|R30324.1|R30324 0 809 28 93.73 427 gi|2764186|gb|R64887.1|R64887 1 F 432 gi|2764183|gb|R64880.1|R64880 0 796 21 95.11 416 gi|2764186|gb|R64887.1|R64887 10 F 415 gi|2764068|gb|R30324.1|R30324 0 783 16 96.15 403 gi|2764186|gb|R64887.1|R64887 7 F 417 gi|2764054|gb|R30268.1|R30268 0 700 40 90.24 446 gi|2764183|gb|R64880.1|R64880 9 F 440 gi|2764068|gb|R30324.1|R30324 0 826 20 95.49 405 gi|2764183|gb|R64880.1|R64880 6 F 413 gi|2764054|gb|R30268.1|R30268 0 710 36 91.20 494 gi|2764162|gb|R64814.1|R64814 0 F 499 gi|2764100|gb|R30437.1|R30437 9 882 37 92.55 449 gi|2764154|gb|R64784.1|R64784 26 F 439 gi|2764013|gb|R30104.1|R30104 0 759 43 90.32 458 gi|2764148|gb|R64752.1|R64752 3 F 471 gi|2764073|gb|R30334.1|R30334 0 827 34 92.68 435 gi|2764122|gb|R30547.1|R30547 6 F 446 gi|2764003|gb|R30056.1|R30056 0 734 49 88.88 399 gi|2764068|gb|R30324.1|R30324 0 F 414 gi|2764054|gb|R30268.1|R30268 3 705 36 91.14 414 gi|3719089|dbj|C99741.1|C99741 0 P 420 gi|3450056|gb|AI100095.1|AI100095 20 729 35 91.61 |